Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 6.6e-70 267.3 140 100.0
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.3e-33 146.7 144 63.9
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.7e-33 146.4 144 59.0
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 6.0e-31 137.9 145 60.7
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 8.7e-30 134.0 137 56.2
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 5.6e-29 131.3 141 55.3
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 3.6e-28 128.6 119 64.7
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 2.4e-27 125.9 142 54.2
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 9.0e-27 124.0 146 54.8
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 1.9e-24 116.3 120 57.5
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 1.6e-23 113.2 116 60.3
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 1.1e-21 107.1 136 53.7
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.1e-21 107.1 136 53.7
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.5e-21 105.9 142 51.4
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 3.3e-21 105.5 134 51.5
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 7.4e-21 104.4 134 50.0
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 2.8e-20 102.4 127 52.0
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 6.2e-20 101.3 110 54.5
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 6.2e-20 101.3 146 47.9
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 8.1e-20 100.9 147 47.6
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 1.4e-19 100.1 137 45.3
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 2.4e-19 99.4 65 73.8
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 2.4e-19 99.4 144 45.1
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 5.3e-19 98.2 106 57.5
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 9.0e-19 97.4 143 46.2
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 1.2e-18 97.1 61 80.3
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 2.0e-18 96.3 64 75.0
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 2.0e-18 96.3 151 45.7
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.6e-18 95.9 135 48.1
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 4.5e-18 95.1 123 48.0
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 4.5e-18 95.1 139 45.3
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 5.8e-18 94.7 67 68.7
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 7.6e-18 94.4 64 73.4
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 1.3e-17 93.6 147 44.2
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 1.7e-17 93.2 139 44.6
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 2.2e-17 92.8 65 70.8
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 6.5e-17 91.3 134 49.3
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 8.4e-17 90.9 88 59.1
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 1.1e-16 90.5 126 49.2
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 1.1e-16 90.5 134 47.8
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.1e-16 90.5 94 56.4
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.9e-16 89.7 94 56.4
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 3.2e-16 89.0 70 60.0
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 3.2e-16 89.0 65 64.6
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 3.2e-16 89.0 102 50.0
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 3.2e-16 89.0 61 68.9
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 4.2e-16 88.6 91 53.8
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 4.2e-16 88.6 91 53.8
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 4.2e-16 88.6 91 53.8
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 4.2e-16 88.6 61 67.2
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 5.5e-16 88.2 66 65.2
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 7.1e-16 87.8 91 52.7
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 7.1e-16 87.8 91 52.7
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 7.1e-16 87.8 91 53.8
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 7.1e-16 87.8 137 43.8
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 9.3e-16 87.4 91 53.8
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 9.3e-16 87.4 91 53.8
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 9.3e-16 87.4 58 72.4
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 9.3e-16 87.4 61 65.6
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-15 87.0 91 52.7
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.2e-15 87.0 91 52.7
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 2.1e-15 86.3 91 53.8
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 4.6e-15 85.1 94 46.8
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 7.9e-15 84.3 91 52.7
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 7.9e-15 84.3 91 52.7
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 7.9e-15 84.3 91 52.7
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 1.0e-14 84.0 128 44.5
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 1.0e-14 84.0 95 51.6
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 1.3e-14 83.6 90 51.1
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 3.0e-14 82.4 71 59.2
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 3.0e-14 82.4 140 43.6
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 5.1e-14 81.6 100 54.0
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 5.1e-14 81.6 61 68.9
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 6.7e-14 81.3 61 63.9
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 6.7e-14 81.3 91 53.8
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 6.7e-14 81.3 91 53.8
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 6.7e-14 81.3 91 53.8
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 6.7e-14 81.3 91 53.8
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 6.7e-14 81.3 96 49.0
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 6.7e-14 81.3 61 62.3
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 8.7e-14 80.9 95 52.6
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 8.7e-14 80.9 93 53.8
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 8.7e-14 80.9 116 45.7
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 8.7e-14 80.9 66 63.6
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.1e-13 80.5 61 62.3
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.1e-13 80.5 61 62.3
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 1.1e-13 80.5 93 53.8
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.5e-13 80.1 63 66.7
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.5e-13 80.1 91 52.7
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 3.3e-13 79.0 101 50.5
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 3.3e-13 79.0 101 50.5
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 9.6e-13 77.4 91 48.4
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 9.6e-13 77.4 91 48.4
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 1.6e-12 76.6 128 43.0
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 6.3e-12 74.7 66 59.1
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 6.3e-12 74.7 91 49.5
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 8.2e-12 74.3 80 53.8
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 8.2e-12 74.3 80 53.8
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 8.2e-12 74.3 80 53.8
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.1e-11 73.9 94 44.7
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 1.1e-11 73.9 94 44.7
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 1.1e-11 73.9 114 43.9
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.4e-11 73.6 95 48.4
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 1.5e-10 70.1 50 68.0
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 3.4e-10 68.9 64 50.0
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 4.5e-10 68.6 55 58.2
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 4.5e-10 68.6 55 58.2
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 6.5e-09 64.7 59 54.2
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.9e-08 63.2 66 56.1
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 1.9e-08 63.2 84 42.9
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 9.3e-08 60.8 56 51.8
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 1.3e-06 57.0 69 49.3
Zm00001eb159180 Zea mays HOM05D006973 ORTHO05D008636 1.8e-06 56.6 58 46.6
Mapoly0073s0059 Marchantia polymorpha HOM05D026704 ORTHO05D030102 3.0e-06 55.8 63 36.5
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 5.1e-06 55.1 53 45.3
Os01g0630300 Oryza sativa ssp. japonica HOM05D006973 ORTHO05D008636 5.1e-06 55.1 57 42.1
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 8.7e-06 54.3 55 50.9


User provided reference genes

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