Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 4.6e-300 1033.9 554 100.0
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 5.1e-182 641.7 558 65.6
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 6.6e-182 641.3 562 65.5
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.7e-177 626.7 566 63.4
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.6e-175 620.2 556 62.8
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 3.0e-174 615.9 566 61.3
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 7.3e-173 611.3 560 60.0
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 2.8e-172 609.4 552 59.4
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.1e-171 607.4 556 61.9
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.1e-171 607.4 558 61.3
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 2.4e-171 606.3 558 61.6
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 5.3e-171 605.1 557 60.1
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 2.9e-169 599.4 556 61.0
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 2.7e-167 592.8 560 57.5
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 3.5e-167 592.4 556 57.9
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 8.7e-166 587.8 580 58.3
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 2.5e-165 586.3 548 61.1
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 4.3e-165 585.5 562 61.2
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 3.4e-162 575.9 561 60.2
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.6e-159 567.0 614 55.4
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 2.1e-159 566.6 565 58.8
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.5e-159 565.8 552 57.8
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 3.9e-158 562.4 566 57.4
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 3.9e-158 562.4 571 58.5
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 6.7e-158 561.6 537 58.5
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 3.3e-157 559.3 566 55.8
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 9.6e-157 557.8 536 57.8
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.8e-156 556.2 569 57.3
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 3.1e-155 552.7 568 58.8
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 6.9e-155 551.6 568 58.8
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 2.0e-154 550.1 538 59.7
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 3.4e-154 549.3 531 57.4
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 4.2e-152 542.3 490 60.2
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.1e-151 540.0 532 56.8
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.3e-150 536.6 555 57.3
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 3.9e-150 535.8 541 57.5
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 5.1e-150 535.4 552 58.7
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 8.7e-150 534.6 534 57.9
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 3.3e-149 532.7 555 54.8
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 7.4e-149 531.6 567 54.0
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 4.8e-148 528.9 554 56.0
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 6.3e-148 528.5 555 55.0
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.4e-147 527.3 536 56.9
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.4e-147 527.3 537 57.5
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 2.4e-147 526.6 536 56.7
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 6.9e-147 525.0 554 54.7
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.5e-146 523.9 562 53.6
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.4e-146 522.7 562 53.4
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 7.2e-144 515.0 556 56.1
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 3.9e-142 509.2 567 56.3
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 3.9e-142 509.2 528 52.5
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 8.8e-142 508.1 559 52.4
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 9.7e-141 504.6 566 54.9
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.7e-140 503.8 566 54.9
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.4e-139 500.7 438 60.0
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.4e-139 500.0 487 57.5
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.1e-136 491.1 556 51.8
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 4.2e-136 489.2 602 48.8
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 5.5e-136 488.8 565 52.7
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 9.4e-136 488.0 581 50.9
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.2e-135 487.6 518 53.1
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 2.3e-134 483.4 545 52.7
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 3.0e-134 483.0 543 51.4
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 3.3e-133 479.6 558 55.4
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 7.4e-133 478.4 545 52.3
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 1.7e-132 477.2 541 51.0
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 2.8e-132 476.5 542 54.2
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 6.3e-132 475.3 582 48.3
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.8e-131 473.8 542 50.7
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 4.1e-131 472.6 542 50.6
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 4.1e-131 472.6 556 51.3
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 7.0e-131 471.9 587 52.1
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 7.0e-131 471.9 565 50.3
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 2.0e-130 470.3 588 48.1
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 3.5e-130 469.5 543 50.3
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 2.9e-129 466.5 586 48.0
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 6.5e-129 465.3 537 50.3
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 8.5e-129 464.9 527 50.3
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.1e-128 464.5 602 48.2
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.9e-128 463.8 536 50.0
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.9e-128 463.8 553 51.7
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 3.6e-127 459.5 552 51.8
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.6e-127 459.5 588 47.8
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 2.3e-126 456.8 606 45.4
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 6.3e-124 448.7 583 47.5
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.4e-123 447.6 558 51.3
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 7.0e-123 445.3 562 50.9
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 1.7e-121 440.7 586 46.6
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 2.9e-121 439.9 567 48.7
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 8.5e-121 438.3 511 54.4
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 2.7e-119 433.3 566 50.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.4e-118 431.0 529 48.0
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 3.0e-118 429.9 574 47.9
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 4.0e-118 429.5 567 49.4
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 1.1e-115 421.4 568 45.6
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 2.0e-114 417.2 555 45.2
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 2.2e-113 413.7 569 43.9
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 5.0e-113 412.5 312 63.5
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 2.5e-112 410.2 596 46.5
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.3e-108 397.9 337 61.4
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 5.9e-106 389.0 601 43.8
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 2.5e-104 383.6 549 45.4
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 5.5e-104 382.5 580 43.6
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 7.2e-104 382.1 570 43.0
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 6.3e-100 369.0 550 46.5
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.6e-98 364.4 721 35.6
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 2.9e-97 360.1 465 46.7
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.1e-96 358.2 554 42.4
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 3.3e-96 356.7 567 43.4
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.1e-95 354.0 524 43.9
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 2.2e-92 344.0 487 43.7
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 2.9e-92 343.6 567 41.3
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.0e-89 335.1 651 35.3
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 6.4e-84 315.8 530 41.3
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 2.0e-77 294.3 443 42.9
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 2.1e-74 284.3 539 36.2
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.6e-71 273.5 568 34.2
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 5.4e-67 259.6 640 33.9
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.1e-64 251.9 266 50.8
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 3.6e-63 246.9 207 58.5
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 3.4e-61 240.4 643 29.1
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 4.4e-61 240.0 476 38.2
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 2.4e-59 234.2 653 29.2
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 6.6e-57 226.1 421 42.3
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.3e-55 221.9 511 36.0
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.1e-54 218.8 290 40.0
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.1e-48 198.7 182 54.4
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 3.1e-38 164.1 289 32.2
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.2e-37 162.2 546 27.5
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 3.4e-37 160.6 164 62.8
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 3.4e-37 160.6 185 53.5
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 1.7e-36 158.3 146 56.2
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 6.5e-36 156.4 283 35.0
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.2e-34 152.1 470 27.0
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 1.3e-31 142.1 134 56.0
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 7.2e-27 126.3 82 69.5
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.2e-27 126.3 82 69.5
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 2.0e-24 118.2 292 28.1
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 8.5e-20 102.8 164 34.1
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 3.1e-14 84.3 96 52.1
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.8e-09 68.6 112 38.4
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 2.6e-08 64.7 93 41.9


User provided reference genes

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