Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 3.0e-287 991.1 495 100.0
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.2e-256 889.4 495 87.9
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.8e-256 888.3 496 88.1
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 7.6e-254 880.2 496 87.3
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.3e-253 879.4 496 86.9
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 3.8e-253 877.9 496 85.9
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 4.9e-253 877.5 496 86.5
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 3.2e-252 874.8 488 87.1
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.2e-252 874.4 496 86.3
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 5.4e-252 874.0 495 86.1
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 7.1e-252 873.6 496 86.3
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 3.5e-251 871.3 496 86.5
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 7.8e-251 870.2 495 85.3
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 6.6e-250 867.1 496 86.1
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.6e-250 867.1 496 85.3
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.9e-249 865.5 496 85.3
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.3e-248 862.8 493 85.4
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.1e-248 862.1 496 84.9
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 4.8e-248 860.9 496 85.1
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 6.2e-248 860.5 494 85.0
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.8e-247 859.0 494 84.0
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 6.9e-247 857.1 492 85.0
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 9.0e-247 856.7 496 84.7
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 1.5e-246 855.9 526 81.9
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 4.5e-246 854.4 494 84.6
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 5.8e-246 854.0 496 84.9
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.8e-245 851.3 494 84.0
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 8.4e-245 850.1 497 83.3
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.1e-244 849.7 492 84.3
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.6e-243 845.9 493 84.0
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 3.5e-243 844.7 494 84.4
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 7.9e-243 843.6 492 83.5
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.0e-242 843.2 491 83.5
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 2.3e-242 842.0 493 84.8
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.1e-241 839.7 493 83.2
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 1.1e-241 839.7 496 81.7
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 2.5e-241 838.6 491 82.9
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 3.3e-241 838.2 496 82.9
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 7.4e-241 837.0 496 83.5
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 7.4e-241 837.0 491 82.7
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 2.8e-240 835.1 493 83.4
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 3.6e-240 834.7 494 82.6
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 4.8e-240 834.3 492 82.7
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.2e-240 833.9 495 82.6
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 6.2e-240 833.9 498 80.7
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 8.1e-240 833.6 491 82.9
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.1e-239 833.2 495 82.6
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.4e-239 832.8 498 81.7
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.4e-239 832.8 532 78.4
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 4.0e-239 831.2 494 83.4
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 9.0e-239 830.1 493 81.5
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.2e-238 829.7 491 83.7
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 1.2e-238 829.7 502 80.9
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.5e-238 829.3 494 83.4
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.4e-238 828.2 495 82.2
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 3.4e-238 828.2 494 82.4
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 4.5e-238 827.8 483 82.8
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 5.8e-238 827.4 493 81.9
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 9.9e-238 826.6 495 82.4
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-237 826.2 495 82.2
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 1.3e-237 826.2 493 80.7
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.7e-237 825.9 506 80.4
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 2.2e-237 825.5 494 83.0
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 4.9e-237 824.3 494 82.2
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 4.9e-237 824.3 492 80.9
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 2.4e-236 822.0 489 82.2
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.1e-236 820.5 495 82.0
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 1.2e-235 819.7 477 84.3
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 2.7e-235 818.5 493 81.7
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.0e-234 816.6 496 80.6
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 1.8e-234 815.8 493 81.1
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 2.3e-234 815.5 495 79.2
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 5.1e-234 814.3 495 79.4
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 8.7e-234 813.5 479 81.4
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 7.4e-233 810.4 494 80.8
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.1e-232 808.9 498 80.5
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 2.1e-232 808.9 493 81.1
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 4.8e-232 807.7 493 80.5
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 6.2e-232 807.4 493 80.3
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 5.3e-231 804.3 501 80.6
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 6.9e-231 803.9 497 79.7
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.9e-229 798.5 493 80.3
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 8.4e-229 797.0 493 80.1
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 8.4e-229 797.0 495 79.6
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.1e-228 796.6 493 79.7
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 2.5e-228 795.4 488 79.9
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.2e-228 795.0 489 80.2
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 4.2e-228 794.7 493 80.3
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 9.3e-228 793.5 487 81.1
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.2e-227 793.1 490 80.4
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 4.6e-227 791.2 489 80.0
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 4.6e-227 791.2 490 80.2
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 6.0e-227 790.8 491 78.8
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.0e-226 790.0 494 78.7
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 2.3e-226 788.9 486 79.4
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 3.9e-226 788.1 496 78.6
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.5e-225 786.2 491 79.0
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.6e-224 782.7 488 79.1
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 8.2e-224 780.4 492 78.7
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 6.9e-223 777.3 484 77.9
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 3.0e-218 761.9 435 86.0
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.9e-217 759.2 513 75.0
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 8.2e-216 753.8 492 76.2
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.8e-215 752.7 488 76.6
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 6.5e-213 744.2 447 81.2
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 6.5e-213 744.2 443 83.1
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 4.2e-212 741.5 440 81.4
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 4.2e-212 741.5 498 73.9
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 5.0e-205 718.0 439 81.3
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 8.5e-205 717.2 488 72.1
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.1e-204 716.8 443 81.7
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 1.9e-204 716.1 444 80.0
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.3e-200 703.4 485 73.2
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 1.3e-200 703.4 389 88.2
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 6.5e-197 691.0 487 70.2
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.2e-189 666.0 493 70.0
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 9.8e-185 650.6 380 84.2
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.8e-184 648.3 497 68.2
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.4e-183 644.8 471 70.9
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.5e-180 636.7 404 78.0
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.5e-177 626.7 499 66.7
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 9.2e-175 617.5 506 61.5
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.7e-173 613.2 385 80.3
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.8e-167 593.2 391 76.5
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 3.2e-167 592.4 382 78.0
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.1e-159 567.4 462 67.5
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 1.4e-159 567.0 348 81.9
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 6.8e-146 521.5 528 51.5
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-133 480.7 266 88.0
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.3e-120 437.6 466 51.5
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.4e-119 434.1 238 87.8
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 4.2e-111 406.0 240 81.7
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 3.9e-109 399.4 301 68.4
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.0e-105 387.1 228 83.8
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.2e-104 383.6 238 77.3
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.1e-103 381.3 431 51.7
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.9e-103 380.6 481 47.4
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 2.5e-100 370.2 251 72.5
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 1.0e-96 358.2 303 65.3
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 6.3e-91 339.0 236 72.5
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 2.5e-87 327.0 235 69.8
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 9.7e-84 315.1 254 66.5
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.7e-76 289.3 192 74.5
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 4.7e-62 243.0 159 75.5
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 9.2e-58 228.8 260 51.2
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 5.8e-52 209.5 150 66.7
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 8.0e-46 189.1 151 70.2
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 1.1e-45 188.7 297 41.4
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.1e-45 188.7 103 84.5
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.3e-45 187.6 99 87.9
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 1.5e-44 184.9 104 82.7
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.4e-42 178.3 145 62.8
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 6.6e-40 169.5 123 68.3
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 4.9e-35 153.3 141 57.4
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.5e-31 141.7 75 88.0
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 9.5e-31 139.0 161 49.1
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 2.1e-30 137.9 79 83.5
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 9.9e-28 129.0 85 74.1
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 8.4e-19 99.4 93 58.1
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 1.2e-17 95.5 75 66.7
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.2e-12 79.0 60 70.0
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 4.9e-11 73.6 50 72.0
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 3.2e-10 70.9 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.2e-09 68.9 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 8.7e-08 62.8 30 86.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 2.8e-06 57.8 38 73.7


User provided reference genes

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