Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 1.7e-145 519.2 255 100.0
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 1.0e-100 370.5 255 71.4
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 7.2e-99 364.4 252 71.0
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.2e-93 347.1 252 67.9
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.2e-93 347.1 252 67.9
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.3e-92 343.6 257 68.1
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 8.0e-90 334.3 255 67.8
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 2.6e-88 329.3 259 66.8
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 9.7e-88 327.4 256 66.8
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.3e-87 327.0 252 62.7
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 7.0e-86 321.2 229 68.6
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 4.5e-85 318.5 254 61.0
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 1.1e-83 313.9 256 62.9
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.9e-83 313.2 212 72.2
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.9e-83 313.2 252 64.3
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.9e-83 313.2 252 64.3
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.5e-83 312.8 208 73.6
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 9.4e-83 310.8 229 65.9
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.6e-82 310.1 230 66.5
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 4.7e-82 308.5 222 70.3
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 4.7e-82 308.5 208 72.6
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.4e-81 307.0 229 66.4
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.3e-81 306.2 228 66.2
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.3e-81 306.2 199 73.9
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.0e-81 305.8 237 65.4
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.0e-81 305.8 237 65.4
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-80 303.9 197 75.1
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 1.2e-80 303.9 197 75.1
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 1.2e-80 303.9 197 74.6
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 1.5e-80 303.5 233 66.5
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.6e-80 302.8 199 73.4
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 3.4e-80 302.4 205 72.7
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 3.4e-80 302.4 197 74.1
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 4.4e-80 302.0 223 67.7
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 9.1e-78 294.3 244 62.3
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 7.7e-77 291.2 240 61.7
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.0e-76 290.8 203 69.5
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.9e-75 286.6 216 66.2
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 3.3e-75 285.8 203 66.5
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 4.2e-75 285.4 195 71.3
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 9.5e-75 284.3 209 66.5
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.6e-74 283.5 203 68.0
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 2.8e-74 282.7 217 65.0
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 4.7e-74 282.0 200 69.5
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 3.0e-73 279.3 217 63.6
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 4.0e-73 278.9 201 67.7
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 6.8e-73 278.1 194 69.6
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.2e-72 277.3 229 61.1
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 2.6e-72 276.2 211 65.9
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 2.6e-72 276.2 211 65.9
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.6e-72 276.2 221 59.3
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 5.7e-72 275.0 211 65.4
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 5.7e-72 275.0 211 64.9
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 5.7e-72 275.0 211 64.9
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 7.5e-72 274.6 216 64.4
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 7.5e-72 274.6 211 65.4
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 7.5e-72 274.6 211 65.4
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.7e-71 273.5 180 73.9
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.2e-71 273.1 195 68.2
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.1e-70 270.8 199 66.3
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.4e-70 270.4 193 67.4
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.8e-70 270.0 196 67.9
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.4e-70 268.5 223 63.2
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 9.2e-70 267.7 201 65.7
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 1.6e-69 266.9 207 62.8
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.5e-69 265.8 193 66.8
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 1.0e-68 264.2 168 75.0
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 2.9e-68 262.7 179 70.4
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 4.3e-67 258.8 212 62.3
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 3.6e-66 255.8 173 69.4
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.0e-65 254.2 196 61.7
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 2.6e-64 249.6 256 52.3
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.9e-62 243.4 250 50.8
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.4e-62 243.0 182 62.6
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 2.4e-62 243.0 223 53.4
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 4.1e-62 242.3 223 53.4
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 3.5e-61 239.2 206 56.8
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 1.5e-59 233.8 196 56.6
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 5.6e-59 231.9 201 61.7
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.8e-58 229.6 157 69.4
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 2.8e-58 229.6 206 58.3
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 3.6e-58 229.2 192 58.9
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 8.1e-58 228.0 196 54.6
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 3.1e-57 226.1 195 52.8
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.6e-56 223.0 248 47.6
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 4.4e-56 222.2 191 60.2
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 5.8e-56 221.9 257 48.2
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.8e-56 221.9 197 54.3
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 6.4e-55 218.4 247 42.9
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 1.9e-54 216.9 248 46.4
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.4e-54 216.5 244 45.9
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 1.2e-53 214.2 211 56.4
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 3.0e-52 209.5 205 47.8
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 4.3e-51 205.7 204 46.1
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 1.2e-50 204.1 246 40.7
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 2.1e-50 203.4 246 40.7
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 2.3e-49 199.9 206 51.9
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 2.3e-49 199.9 193 50.8
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.0e-49 199.1 223 50.7
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 6.8e-49 198.4 196 53.1
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 8.9e-49 198.0 264 43.6
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 8.9e-49 198.0 194 46.4
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 1.2e-48 197.6 192 47.4
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 3.4e-48 196.1 246 41.1
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 2.2e-47 193.4 248 39.9
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 4.9e-47 192.2 194 46.4
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 6.4e-47 191.8 144 63.2
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 8.3e-47 191.4 145 62.8
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 8.3e-47 191.4 245 41.6
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 8.3e-47 191.4 191 46.1
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.1e-46 191.0 248 39.5
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 1.9e-46 190.3 194 45.4
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 9.2e-46 188.0 135 68.1
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.1e-45 186.8 219 43.8
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-44 183.7 138 65.2
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.5e-43 180.6 167 47.9
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 4.3e-43 179.1 242 38.8
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 5.6e-43 178.7 245 40.4
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 7.3e-43 178.3 223 41.3
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 9.6e-43 177.9 227 43.2
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-42 177.2 138 61.6
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.7e-42 175.6 245 40.0
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 8.1e-42 174.9 219 42.5
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 1.1e-41 174.5 211 47.9
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 2.4e-41 173.3 195 43.1
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 3.1e-41 172.9 183 45.4
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.1e-41 172.9 236 39.8
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 3.1e-41 172.9 215 43.7
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 1.5e-40 170.6 191 47.1
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.0e-40 170.2 240 38.3
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.3e-39 167.5 164 51.8
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.9e-39 166.4 185 48.6
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 4.9e-39 165.6 150 48.0
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 6.4e-39 165.2 223 39.5
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 1.9e-38 163.7 199 39.2
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.6e-37 160.6 219 39.3
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.7e-37 159.8 257 36.6
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 6.0e-37 158.7 202 36.6
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 7.8e-37 158.3 219 42.0
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 4.3e-35 152.5 203 38.9
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 7.3e-35 151.8 105 68.6
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.3e-34 151.0 249 33.7
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 8.1e-34 148.3 198 39.4
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.4e-32 142.5 246 39.0
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.1e-30 137.9 196 37.8
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 1.9e-30 137.1 173 42.8
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 9.3e-30 134.8 134 53.0
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.2e-29 134.4 134 53.0
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 5.1e-28 129.0 100 66.0
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 8.7e-28 128.3 192 35.4
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 7.3e-27 125.2 199 35.2
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.4e-22 110.9 152 41.4
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 2.4e-22 110.2 115 42.6
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 1.0e-20 104.8 87 62.1
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 1.1e-17 94.7 180 31.1
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 7.6e-16 88.6 74 64.9
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 7.6e-16 88.6 206 32.5
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 1.3e-15 87.8 197 28.4
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 7.1e-14 82.0 62 67.7
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 1.6e-13 80.9 75 56.0
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.6e-13 80.9 168 30.4
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 2.3e-12 77.0 74 52.7
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 3.3e-11 73.2 122 36.9
Pp3c1_32760 Physcomitrium patens HOM05D019249 ORTHO05D019657 1.6e-10 70.9 201 25.4
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 6.3e-10 68.9 66 56.1
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 8.2e-10 68.6 167 28.7
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 7.6e-08 62.0 54 51.9


User provided reference genes

Program Settings