Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 3.3e-95 351.7 175 100.0
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 4.7e-73 278.1 165 80.6
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 1.5e-71 273.1 165 80.0
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 2.6e-71 272.3 164 79.9
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 1.7e-70 269.6 169 76.3
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 6.3e-70 267.7 165 77.6
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 3.1e-69 265.4 165 78.2
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 3.1e-69 265.4 165 78.2
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 3.1e-69 265.4 165 77.6
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 1.2e-68 263.5 163 79.1
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 4.5e-68 261.5 164 76.2
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 5.9e-68 261.2 164 75.6
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 5.9e-68 261.2 165 74.5
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 1.7e-67 259.6 165 77.0
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 1.9e-66 256.1 168 73.8
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 2.5e-66 255.8 164 75.6
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 1.6e-65 253.1 163 76.1
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 1.6e-65 253.1 163 76.1
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 1.6e-65 253.1 165 72.7
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 2.1e-65 252.7 165 73.9
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 2.7e-65 252.3 165 75.2
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.6e-65 251.9 170 74.1
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 5.2e-64 248.1 200 63.5
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 8.8e-64 247.3 163 73.0
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 8.8e-64 247.3 162 73.5
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 8.8e-64 247.3 165 70.3
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 2.6e-63 245.7 167 71.9
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 2.6e-63 245.7 162 70.4
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 3.3e-63 245.4 166 72.3
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 7.4e-63 244.2 163 72.4
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 9.7e-63 243.8 165 72.7
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 3.1e-61 238.8 183 68.9
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 5.3e-61 238.0 163 69.9
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 7.0e-61 237.7 163 69.9
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 9.1e-61 237.3 163 71.2
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 9.1e-61 237.3 154 76.0
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 9.1e-61 237.3 154 76.0
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.0e-60 236.1 165 69.1
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 3.5e-60 235.3 163 70.6
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 7.7e-60 234.2 163 68.7
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 1.7e-59 233.0 165 67.9
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 2.2e-59 232.6 163 71.2
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 3.8e-59 231.9 163 68.7
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 3.8e-59 231.9 163 69.3
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 8.5e-59 230.7 164 68.9
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.1e-58 230.3 163 68.1
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 1.5e-58 229.9 154 71.4
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 5.5e-58 228.0 165 70.3
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 5.5e-58 228.0 165 66.7
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 7.2e-58 227.6 165 67.9
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 4.7e-57 224.9 165 66.1
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 4.7e-57 224.9 154 72.1
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.0e-56 223.8 163 65.6
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 3.0e-56 222.2 165 67.9
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 5.2e-56 221.5 150 70.7
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 6.8e-56 221.1 165 66.1
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.5e-55 219.9 154 71.4
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 1.5e-55 219.9 166 65.7
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 7.5e-55 217.6 165 67.3
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 7.5e-55 217.6 163 64.4
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 6.3e-54 214.5 175 61.1
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 8.3e-54 214.2 166 63.9
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 3.1e-53 212.2 163 63.8
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 4.1e-53 211.8 164 64.6
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 7.0e-53 211.1 172 58.7
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 2.0e-52 209.5 162 63.6
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 2.0e-52 209.5 164 61.0
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 2.7e-52 209.1 165 62.4
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 3.5e-52 208.8 164 63.4
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 3.5e-52 208.8 162 64.2
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 3.5e-52 208.8 162 64.2
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 3.5e-52 208.8 162 64.2
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 4.5e-52 208.4 162 64.2
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 5.9e-52 208.0 162 64.2
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 5.9e-52 208.0 162 64.2
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 5.9e-52 208.0 162 64.2
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 7.7e-52 207.6 166 62.7
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 1.3e-51 206.8 162 63.6
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.7e-51 206.5 166 60.8
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 1.7e-51 206.5 162 63.0
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 2.9e-51 205.7 163 65.0
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 2.9e-51 205.7 163 65.0
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 6.5e-51 204.5 163 64.4
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 6.5e-51 204.5 163 63.8
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 8.5e-51 204.1 162 64.2
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.5e-50 203.4 169 61.5
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.9e-50 203.0 169 61.5
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.9e-50 203.0 169 61.5
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 2.7e-49 199.1 149 66.4
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 1.4e-48 196.8 162 61.1
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 6.8e-48 194.5 170 58.2
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 2.0e-47 193.0 124 75.8
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 2.6e-47 192.6 162 58.0
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 4.4e-47 191.8 167 57.5
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 2.4e-45 186.0 152 64.5
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 5.4e-45 184.9 166 57.8
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.2e-41 173.7 113 69.9
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 1.0e-40 170.6 164 54.3
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.2e-38 162.9 162 51.2
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 1.1e-37 160.6 179 49.7
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 1.2e-36 157.1 179 49.7
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-32 144.1 165 46.1
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-30 137.1 181 47.0
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 2.9e-30 136.0 181 47.0
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 7.8e-28 127.9 177 39.0
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 1.5e-26 123.6 101 57.4
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-26 123.2 166 47.6
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-26 122.9 179 40.8
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 9.5e-26 120.9 116 51.7
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 1.2e-25 120.6 111 58.6
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-25 119.8 175 45.7
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 1.4e-24 117.1 148 41.9
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 1.8e-24 116.7 141 41.1
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 2.3e-24 116.3 185 40.5
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 2.0e-23 113.2 177 37.9
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 7.5e-23 111.3 70 80.0
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 4.9e-22 108.6 178 34.8
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 4.9e-22 108.6 170 40.0
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 4.9e-22 108.6 76 71.1
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 6.4e-22 108.2 108 56.5
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-21 107.5 147 40.8
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 3.2e-21 105.9 68 69.1
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 4.1e-21 105.5 164 36.6
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-20 103.2 174 36.2
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 2.7e-20 102.8 156 39.1
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 3.9e-19 99.0 165 38.2
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 4.3e-18 95.5 164 34.8
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 3.6e-17 92.4 174 35.1
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 4.7e-17 92.0 71 69.0
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 8.9e-16 87.8 109 43.1
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.5e-15 87.0 153 32.7
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-15 86.3 127 38.6
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-14 84.0 166 32.5
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-14 84.0 115 46.1
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.1e-13 80.9 166 33.1
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 7.1e-13 78.2 113 42.5
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-12 77.4 176 31.8
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 2.7e-12 76.3 179 32.4
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 3.5e-12 75.9 133 34.6
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-11 74.3 146 34.9
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-11 73.6 178 30.3
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 3.0e-11 72.8 41 78.0
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-10 69.7 171 28.1
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 5.6e-10 68.6 182 29.1
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 9.6e-10 67.8 203 29.1
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 3.6e-09 65.9 127 33.1
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 4.7e-09 65.5 131 29.8
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 1.7e-06 57.0 178 28.7
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 2.2e-06 56.6 116 31.0
Atru.chr6.94 Acer truncatum HOM05D004737 ORTHO05D005623 3.8e-06 55.8 64 48.4


User provided reference genes

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