Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1491.1 775 100.0
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1178.3 771 80.4
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1169.1 784 76.4
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1166.4 748 79.4
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1159.1 783 76.2
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1158.7 796 75.3
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1158.3 787 76.1
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1156.0 783 76.9
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1155.2 762 78.0
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1152.5 751 78.4
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1151.0 796 75.0
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1147.5 778 77.0
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1147.5 762 76.6
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1147.5 776 76.2
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1144.8 754 77.9
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1139.0 739 78.1
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1135.9 776 74.9
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1135.6 746 78.0
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1134.4 757 78.5
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1133.6 781 75.2
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1132.9 778 74.9
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1131.3 775 75.4
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1129.8 777 75.3
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1129.4 777 76.7
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1122.8 731 77.0
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1120.5 772 73.8
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1118.6 777 74.5
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1117.8 776 74.2
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1112.1 716 78.9
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1111.7 817 72.3
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1110.5 776 74.2
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1109.0 770 74.3
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1109.0 791 72.2
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1107.4 768 74.2
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1105.1 767 74.2
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1104.0 757 75.3
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1103.2 770 76.1
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1102.0 757 75.2
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1094.7 758 74.0
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1092.4 779 74.8
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1087.8 724 76.8
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1085.9 785 74.3
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1085.5 729 75.4
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1084.7 785 74.1
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1083.6 772 73.2
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1082.4 752 73.8
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1081.2 731 74.1
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1080.1 769 73.1
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.1e-311 1072.0 700 76.9
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 4.8e-311 1070.8 778 71.0
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 8.0e-311 1070.1 762 72.8
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 8.9e-310 1066.6 720 77.6
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 5.8e-309 1063.9 794 70.5
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 1.9e-307 1058.9 818 68.1
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 5.4e-307 1057.4 720 74.6
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 6.0e-306 1053.9 759 73.4
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 3.0e-305 1051.6 747 73.0
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 3.0e-305 1051.6 747 73.0
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 3.9e-305 1051.2 751 73.2
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 5.6e-304 1047.3 741 72.5
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 793 71.0
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 1.4e-302 1042.7 751 72.7
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.8e-302 1042.3 757 72.4
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.8e-302 1042.3 731 73.3
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 2.4e-302 1042.0 730 71.9
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 2.6e-301 1038.5 735 74.0
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 7.6e-301 1036.9 772 73.8
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 8.4e-300 1033.5 719 74.3
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.9e-299 1032.3 800 69.0
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 2.7e-298 1028.5 790 70.6
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 7.8e-298 1026.9 789 70.7
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.0e-297 1026.5 791 70.3
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 3.0e-297 1025.0 774 69.8
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 2.5e-296 1021.9 791 70.5
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 2.5e-296 1021.9 790 70.5
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 7.3e-296 1020.4 790 70.5
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 9.6e-296 1020.0 770 69.7
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.4e-294 1016.1 737 71.8
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 9.0e-294 1013.4 723 73.2
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.2e-293 1013.1 789 70.8
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 4.5e-293 1011.1 788 69.5
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 7.6e-293 1010.4 758 70.4
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 1.7e-292 1009.2 682 75.4
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 6.4e-292 1007.3 838 65.2
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 5.4e-291 1004.2 774 69.8
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 2.1e-290 1002.3 783 70.6
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 2.1e-290 1002.3 783 70.5
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 3.5e-290 1001.5 783 70.4
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 3.5e-290 1001.5 783 70.6
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 6.0e-290 1000.7 793 68.9
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 7.9e-290 1000.3 653 76.9
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 9.9e-285 983.4 740 68.0
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 7.9e-282 973.8 701 72.6
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 5.6e-280 967.6 734 68.5
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 3.7e-279 964.9 774 64.7
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 4.5e-269 931.4 722 67.7
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 2.6e-256 889.0 630 77.9
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.2e-243 845.1 538 77.9
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 8.0e-242 840.9 538 77.3
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 5.9e-229 798.1 730 57.0
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 1.3e-228 797.0 751 55.0
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 5.7e-224 781.6 719 58.4
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.4e-222 776.2 741 55.3
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 3.6e-218 762.3 783 55.0
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 6.1e-218 761.5 543 66.3
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 4.7e-210 735.3 529 66.9
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 1.1e-209 734.2 531 65.9
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 6.6e-196 688.3 535 62.6
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.0e-188 662.9 414 78.7
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 8.4e-175 618.2 403 77.9
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 7.6e-160 568.5 414 65.2
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 3.2e-150 536.6 343 78.1
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.7e-131 472.6 269 83.3
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 2.3e-100 370.9 699 36.3
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 5.2e-100 369.8 489 42.5
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 4.6e-96 356.7 264 65.2
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 4.3e-94 350.1 295 62.7
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 1.1e-81 308.9 607 38.7
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 7.1e-73 279.6 280 57.1
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.2e-67 262.3 582 32.0
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.6e-67 261.2 351 46.7
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 3.9e-39 167.5 99 77.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 6.3e-37 160.2 83 88.0
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 4.2e-33 147.5 153 55.6
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.2e-32 146.0 123 63.4
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 9.7e-22 109.8 54 88.9
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.6e-19 102.4 135 42.2
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 1.3e-18 99.4 152 43.4
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.6e-16 92.4 103 49.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.2e-13 82.0 77 54.5
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 1.0e-10 73.2 41 80.5
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.7e-10 72.4 73 57.5
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 2.7e-08 65.1 67 50.7
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 6.1e-08 63.9 364 23.9
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 5.7e-06 57.4 82 41.5
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 7.5e-06 57.0 80 42.5
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 9.8e-06 56.6 341 24.3


User provided reference genes

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