Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 4.3e-80 301.2 148 100.0
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 5.5e-75 284.3 148 94.6
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 1.7e-63 246.1 154 80.5
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 2.6e-61 238.8 154 79.2
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 4.5e-61 238.0 151 78.1
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 5.9e-61 237.7 154 79.2
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.9e-61 237.7 155 79.4
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.3e-60 236.5 153 78.4
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.7e-60 236.1 157 78.3
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.7e-60 236.1 153 78.4
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 1.7e-60 236.1 153 78.4
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.2e-60 235.7 152 78.9
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 8.5e-60 233.8 154 77.9
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.1e-59 233.4 154 80.5
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.5e-59 233.0 155 78.1
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.9e-59 232.6 153 75.2
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 3.2e-59 231.9 145 79.3
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.5e-59 231.1 157 78.3
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 3.6e-58 228.4 137 83.9
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 4.7e-58 228.0 155 76.1
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 8.0e-58 227.3 157 77.1
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 1.0e-57 226.9 152 77.6
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 3.0e-57 225.3 148 78.4
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 3.0e-57 225.3 152 77.0
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 6.7e-57 224.2 152 76.3
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.2e-56 223.4 160 70.6
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 2.6e-56 222.2 146 76.7
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 2.6e-56 222.2 145 77.9
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 3.3e-56 221.9 158 75.3
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 3.3e-56 221.9 131 85.5
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 3.3e-56 221.9 151 75.5
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 4.4e-56 221.5 146 77.4
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 4.4e-56 221.5 154 76.0
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 7.5e-56 220.7 155 72.9
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 9.7e-56 220.3 155 72.3
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.3e-55 219.9 160 73.1
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.3e-55 219.9 158 73.4
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 1.3e-55 219.9 146 76.7
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.7e-55 219.5 126 86.5
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.1e-54 216.9 154 72.1
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 1.8e-54 216.1 160 71.9
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 1.8e-54 216.1 152 75.0
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.4e-54 215.7 136 80.1
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 2.4e-54 215.7 145 76.6
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 4.1e-54 214.9 151 73.5
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 7.0e-54 214.2 146 74.7
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 7.0e-54 214.2 146 74.7
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 1.2e-53 213.4 145 75.2
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.2e-53 213.4 151 72.2
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 1.6e-53 213.0 154 70.8
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 2.0e-53 212.6 145 74.5
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.0e-53 212.6 149 72.5
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.7e-53 212.2 156 73.1
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 4.5e-53 211.5 156 72.4
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.9e-53 211.1 148 73.0
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 5.9e-53 211.1 154 72.7
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 7.7e-53 210.7 162 71.0
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 1.0e-52 210.3 153 69.3
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 1.7e-52 209.5 145 73.8
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.7e-52 209.5 157 72.0
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 2.2e-52 209.1 148 73.6
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 2.9e-52 208.8 156 70.5
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 2.9e-52 208.8 145 75.2
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 3.8e-52 208.4 123 83.7
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 3.8e-52 208.4 156 71.2
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 5.0e-52 208.0 157 71.3
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 5.0e-52 208.0 134 78.4
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.5e-52 207.6 148 73.0
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 8.5e-52 207.2 172 66.9
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 8.5e-52 207.2 171 67.8
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 1.5e-51 206.5 147 73.5
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 1.5e-51 206.5 159 69.8
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 1.9e-51 206.1 145 72.4
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.5e-51 205.7 148 71.6
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 3.2e-51 205.3 126 81.7
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 3.2e-51 205.3 154 72.1
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 3.2e-51 205.3 150 72.7
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 3.2e-51 205.3 149 71.8
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 5.5e-51 204.5 155 69.7
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 7.2e-51 204.1 156 71.2
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 7.2e-51 204.1 156 71.2
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 7.2e-51 204.1 156 71.2
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.2e-50 203.4 162 67.9
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 1.2e-50 203.4 139 77.0
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.6e-50 203.0 173 65.9
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.6e-50 203.0 158 68.4
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 4.7e-50 201.4 151 70.2
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.7e-50 201.4 160 66.2
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 6.1e-50 201.1 124 78.2
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 6.1e-50 201.1 119 82.4
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 8.0e-50 200.7 123 80.5
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.4e-49 199.9 160 65.6
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 5.2e-49 198.0 161 66.5
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.2e-49 198.0 161 65.8
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 5.2e-49 198.0 124 77.4
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 5.2e-49 198.0 138 76.8
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 6.8e-49 197.6 146 69.9
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 8.8e-49 197.2 152 69.1
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.5e-48 196.4 117 84.6
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.5e-48 196.4 167 65.3
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 2.6e-48 195.7 168 64.9
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.4e-48 194.9 150 68.7
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 4.4e-48 194.9 126 78.6
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 7.5e-48 194.1 187 58.3
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 9.8e-48 193.7 116 83.6
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.3e-47 193.4 146 68.5
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.2e-47 192.6 136 72.8
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 2.2e-47 192.6 152 67.8
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 8.3e-47 190.7 147 68.0
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.1e-46 190.3 134 76.1
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.4e-46 189.9 166 62.7
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.1e-46 188.3 119 75.6
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.0e-46 187.6 156 68.6
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 9.1e-46 187.2 115 80.0
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 9.1e-46 187.2 155 68.4
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.6e-45 186.4 155 64.5
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.6e-45 186.4 155 64.5
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 2.7e-45 185.7 139 72.7
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 5.9e-45 184.5 153 64.1
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 1.3e-44 183.3 217 53.5
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.7e-44 183.0 146 67.1
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 3.8e-44 181.8 120 75.0
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 6.5e-44 181.0 138 68.1
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 6.5e-44 181.0 116 77.6
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 1.5e-43 179.9 119 74.8
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 3.3e-43 178.7 118 75.4
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.2e-42 176.8 106 84.0
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.6e-42 176.4 105 84.8
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.6e-42 175.3 120 74.2
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.4e-41 173.3 121 72.7
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 3.0e-41 172.2 116 75.9
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 2.0e-40 169.5 118 70.3
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.6e-40 169.1 203 50.7
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 2.2e-39 166.0 102 80.4
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 2.2e-39 166.0 104 80.8
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.8e-39 165.6 148 62.8
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.8e-39 165.6 148 62.8
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.4e-38 162.5 136 64.7
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 9.2e-38 160.6 132 63.6
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.6e-37 159.8 156 60.3
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 3.5e-37 158.7 154 56.5
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 5.9e-37 157.9 142 62.7
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.3e-36 156.8 127 65.4
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 8.6e-36 154.1 125 63.2
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 1.6e-34 149.8 127 60.6
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.8e-33 146.4 95 76.8
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.3e-28 130.2 133 54.1
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 6.6e-28 127.9 107 65.4
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 3.3e-27 125.6 76 86.8
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 3.1e-25 119.0 119 49.6
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 4.0e-25 118.6 82 73.2
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 9.8e-24 114.0 58 91.4
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 2.9e-23 112.5 99 63.6
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.4e-22 109.4 136 51.5
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 2.3e-20 102.8 74 74.3
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 3.9e-20 102.1 60 83.3
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 8.6e-20 100.9 55 80.0
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 1.9e-19 99.8 75 69.3
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.6e-18 96.7 75 68.0
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 4.7e-18 95.1 75 66.7
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.3e-15 87.0 47 85.1
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 1.6e-13 80.1 133 38.3
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 1.7e-12 76.6 133 39.8
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 2.5e-11 72.8 153 32.7
Sabra14G0052800 Salix brachista HOM05D000186 ORTHO05D001124 2.8e-10 69.3 144 38.9
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 8.9e-09 64.3 39 74.4


User provided reference genes

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