Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G212200 Manihot esculenta HOM05D005775 ORTHO05D000023 3.2e-247 858.2 512 100.0
Haze_04786 Corylus avellana HOM05D005775 ORTHO05D000023 1.4e-141 507.3 518 66.4
Prupe.8G249700 Prunus persica HOM05D005775 ORTHO05D000023 1.2e-137 494.2 514 64.8
CSS0012831 Camellia sinensis var. sinensis HOM05D005775 ORTHO05D000023 1.3e-136 490.7 516 66.3
Dinv32979 Davidia involucrata HOM05D005775 ORTHO05D000023 4.8e-134 482.3 515 66.4
Actinidia24301 Actinidia chinensis HOM05D005775 ORTHO05D000023 2.4e-133 479.9 513 65.1
Ciclev10019759m.g Citrus clementina HOM05D005775 ORTHO05D000023 5.8e-132 475.3 522 62.8
Rhsim01G0278600 Rhododendron simsii HOM05D005775 ORTHO05D000023 3.2e-130 469.5 514 62.3
Thecc.01G287300 Theobroma cacao HOM05D005775 ORTHO05D000023 6.0e-129 465.3 530 63.6
CiPaw.09G181700 Carya illinoinensis HOM05D005775 ORTHO05D000023 8.1e-126 454.9 516 62.8
RcHm_v2.0_Chr6g0292231 Rosa chinensis HOM05D005775 ORTHO05D000023 6.9e-125 451.8 515 61.4
QL12p023176 Quercus lobata HOM05D005775 ORTHO05D000023 1.2e-124 451.1 517 62.9
Peaxi162Scf00517g00426 Petunia axillaris HOM05D005775 ORTHO05D000023 9.9e-124 448.0 506 61.3
Lj2C1182T1 Lonicera japonica HOM05D005775 ORTHO05D000023 2.2e-123 446.8 439 69.9
vmacro02530 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 2.9e-123 446.4 513 62.0
GSVIVG01011040001 Vitis vinifera HOM05D005775 ORTHO05D000023 3.2e-122 443.0 466 67.4
Dinv11278 Davidia involucrata HOM05D005775 ORTHO05D000023 5.5e-122 442.2 510 63.1
Hma1.2p1_0209F.1_g089290 Hydrangea macrophylla HOM05D005775 ORTHO05D000023 2.7e-121 439.9 518 62.2
FAN20G1843 Fragaria x ananassa HOM05D005775 ORTHO05D000023 1.3e-120 437.6 521 59.1
Aqoxy2G03167 Aquilegia oxysepala HOM05D005775 ORTHO05D000023 3.9e-120 436.0 511 58.7
Gohir.A08G071400 Gossypium hirsutum HOM05D005775 ORTHO05D000023 1.4e-117 427.6 528 59.1
Gohir.D08G079600 Gossypium hirsutum HOM05D005775 ORTHO05D000023 5.3e-117 425.6 528 58.7
Gorai.004G084600 Gossypium raimondii HOM05D005775 ORTHO05D000023 1.5e-116 424.1 528 58.7
TWI14G1024 Tripterygium wilfordii HOM05D005775 ORTHO05D000023 2.2e-115 420.2 514 58.9
Sc17g0003740 Simmondsia chinensis HOM05D005775 ORTHO05D000023 3.8e-115 419.5 457 65.2
MD03G1273200 Malus domestica HOM05D005775 ORTHO05D000023 8.4e-115 418.3 521 60.3
Lalb_Chr17g0335721 Lupinus albus HOM05D005775 ORTHO05D000023 1.8e-112 410.6 461 61.6
FAN27G3110 Fragaria x ananassa HOM05D005775 ORTHO05D000023 3.9e-112 409.5 518 57.9
DCAR_005831 Daucus carota HOM05D005775 ORTHO05D000023 1.5e-111 407.5 516 56.8
ClCG00G003600 Citrullus lanatus HOM05D005775 ORTHO05D000023 7.4e-111 405.2 473 49.3
TAR365G0919 Trochodendron aralioides HOM05D005775 ORTHO05D000023 9.6e-111 404.8 520 58.5
CAN.G438.46 Capsicum annuum HOM05D005775 ORTHO05D000023 4.8e-110 402.5 460 61.5
Eucgr.H01610 Eucalyptus grandis HOM05D005775 ORTHO05D000023 2.4e-109 400.2 519 59.0
ClCG00G000240 Citrullus lanatus HOM05D005775 ORTHO05D000023 4.5e-108 396.0 473 61.9
ClCG10G003500 Citrullus lanatus HOM05D005775 ORTHO05D000023 4.5e-108 396.0 473 61.9
Cpa.g.sc731.2 Carica papaya HOM05D005775 ORTHO05D000023 5.9e-108 395.6 492 59.8
FAN24G2890 Fragaria x ananassa HOM05D005775 ORTHO05D000023 5.9e-108 395.6 522 56.1
FAN15G0955 Fragaria x ananassa HOM05D005775 ORTHO05D000023 7.6e-108 395.2 523 56.2
Sabra16G0115500 Salix brachista HOM05D005775 ORTHO05D000023 2.9e-107 393.3 527 57.1
Rhsim13G0020300 Rhododendron simsii HOM05D005775 ORTHO05D000023 8.5e-107 391.7 513 58.7
Glyma.03G148400 Glycine max HOM05D005775 ORTHO05D000023 1.1e-106 391.3 456 59.2
HanXRQChr09g0252061 Helianthus annuus HOM05D005775 ORTHO05D000023 2.1e-105 387.1 513 56.1
PGSC0003DMG400026158 Solanum tuberosum HOM05D005775 ORTHO05D000023 2.1e-105 387.1 506 57.1
Solyc07g053060.3 Solanum lycopersicum HOM05D005775 ORTHO05D000023 1.8e-104 384.0 506 56.7
COL.COLO4_08057 Corchorus olitorius HOM05D005775 ORTHO05D000023 3.0e-104 383.3 530 56.8
Hund05366 Selenicereus undatus HOM05D005775 ORTHO05D000023 5.1e-104 382.5 518 56.8
Potri.016G119600 Populus trichocarpa HOM05D005775 ORTHO05D000023 6.7e-104 382.1 553 54.1
Sed0008104 Sechium edule HOM05D005775 ORTHO05D000023 1.1e-103 381.3 517 57.4
Oeu047904.1 Olea europaea HOM05D005775 ORTHO05D000023 2.5e-103 380.2 486 58.6
TAR636G1825 Trochodendron aralioides HOM05D005775 ORTHO05D000023 2.5e-103 380.2 513 56.7
Cc01_g19990 Coffea canephora HOM05D005775 ORTHO05D000023 4.3e-103 379.4 523 56.4
Sed0017897 Sechium edule HOM05D005775 ORTHO05D000023 4.3e-103 379.4 504 58.7
MELO3C014018.2 Cucumis melo HOM05D005775 ORTHO05D000023 8.2e-102 375.2 500 58.2
CANSAT25G1854 Cannabis sativa HOM05D005775 ORTHO05D000023 1.8e-101 374.0 518 57.1
Sopen07g026610 Solanum pennellii HOM05D005775 ORTHO05D000023 3.1e-101 373.2 506 55.7
Migut.N02129 Erythranthe guttata HOM05D005775 ORTHO05D000023 2.6e-100 370.2 451 62.3
Lj1g0019119 Lotus japonicus HOM05D005775 ORTHO05D000023 3.4e-100 369.8 469 56.5
Glyma.19G151700 Glycine max HOM05D005775 ORTHO05D000023 1.0e-99 368.2 458 58.5
THA.LOC104817539 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 3.6e-97 359.8 517 54.4
Medtr2g049540 Medicago truncatula HOM05D005775 ORTHO05D000023 6.1e-97 359.0 437 59.0
DCAR_002776 Daucus carota HOM05D005775 ORTHO05D000023 1.0e-96 358.2 441 58.5
MSTRG.12583 Avicennia marina HOM05D005775 ORTHO05D000023 1.8e-96 357.5 450 60.0
ECA234G1745 Erigeron canadensis HOM05D005775 ORTHO05D000023 2.3e-96 357.1 470 54.9
Carub.0004s1199 Capsella rubella HOM05D005775 ORTHO05D000023 3.0e-96 356.7 424 58.7
CsaV3_3G003500 Cucumis sativus L. HOM05D005775 ORTHO05D000023 3.0e-96 356.7 470 59.4
THA.LOC104800814 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 1.5e-95 354.4 443 58.5
Ah.08g220410 Amaranthus hybridus HOM05D005775 ORTHO05D000023 2.0e-95 354.0 455 60.7
Medtr5g076010 Medicago truncatula HOM05D005775 ORTHO05D000023 9.7e-95 351.7 437 58.4
ATR0487G016 Amborella trichopoda HOM05D005775 ORTHO05D000023 1.7e-94 350.9 436 60.1
AT2G30780 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 3.7e-94 349.7 440 56.6
HanXRQChr12g0362741 Helianthus annuus HOM05D005775 ORTHO05D000023 1.1e-93 348.2 427 59.3
BraA04t17874Z Brassica rapa HOM05D005775 ORTHO05D000023 4.1e-93 346.3 424 57.3
MBI18_g06533_MAGBIO Magnolia biondii HOM05D005775 ORTHO05D000023 4.1e-93 346.3 514 53.9
Thhalv10016605m.g Eutrema salsugineum HOM05D005775 ORTHO05D000023 6.9e-93 345.5 427 56.4
AL4G25710 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 9.1e-93 345.1 417 59.0
A04p23470 Brassica napus HOM05D005775 ORTHO05D000023 3.4e-92 343.2 424 57.8
SalBow2G0958 Salvia bowleyana HOM05D005775 ORTHO05D000023 5.9e-92 342.4 510 53.3
Aa31LG5G6080 Aethionema arabicum HOM05D005775 ORTHO05D000023 7.7e-92 342.0 448 57.4
BolC4t27488H Brassica oleracea HOM05D005775 ORTHO05D000023 7.7e-92 342.0 424 57.1
Atru.chr5.1309 Acer truncatum HOM05D005775 ORTHO05D000023 1.0e-91 341.7 468 58.8
C04p59780 Brassica napus HOM05D005775 ORTHO05D000023 1.0e-91 341.7 424 57.3
Lsat_1_v5_gn_6_117561 Lactuca sativa HOM05D005775 ORTHO05D000023 2.2e-91 340.5 518 51.9
CARHR124250 Cardamine hirsuta HOM05D005775 ORTHO05D000023 3.8e-91 339.7 425 57.6
Sp4g13280 Schrenkiella parvula HOM05D005775 ORTHO05D000023 3.8e-91 339.7 441 54.4
VMungo1383G3055 Vigna mungo HOM05D005775 ORTHO05D000023 5.5e-90 335.9 456 55.0
EL10Ac7g17159 Beta vulgaris HOM05D005775 ORTHO05D000023 7.2e-90 335.5 373 65.1
SGA_v2.0_scaffold172G39044 Striga asiatica HOM05D005775 ORTHO05D000023 7.2e-90 335.5 453 58.7
AL4G25690 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 4.7e-89 332.8 401 59.1
AUR62037928 Chenopodium quinoa HOM05D005775 ORTHO05D000023 3.3e-87 326.6 385 63.1
Psat1g018400 Pisum sativum HOM05D005775 ORTHO05D000023 5.7e-87 325.9 520 51.0
Phvul.001G146400 Phaseolus vulgaris HOM05D005775 ORTHO05D000023 1.7e-86 324.3 458 55.0
SHI15422 Sapria himalayana HOM05D005775 ORTHO05D000023 1.7e-86 324.3 433 43.0
Migut.O00883 Erythranthe guttata HOM05D005775 ORTHO05D000023 2.2e-86 323.9 393 64.1
PSO541G6072 Papaver somniferum HOM05D005775 ORTHO05D000023 1.1e-85 321.6 519 52.8
FvH4_2g24360 Fragaria vesca HOM05D005775 ORTHO05D000023 1.8e-85 320.9 523 50.9
arahy.Tifrunner.gnm1.ann1.9RSW73 Arachis hypogaea HOM05D005775 ORTHO05D000023 9.1e-85 318.5 520 50.0
arahy.Tifrunner.gnm1.ann1.84DKWJ Arachis hypogaea HOM05D005775 ORTHO05D000023 2.0e-84 317.4 520 50.4
AUR62043492 Chenopodium quinoa HOM05D005775 ORTHO05D006285 1.2e-81 308.1 365 64.1
TPR.G17547 Trifolium pratense HOM05D005775 ORTHO05D000023 2.1e-81 307.4 519 50.9
vmacro14952 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 2.1e-81 307.4 407 60.4
Carub.0004s3072 Capsella rubella HOM05D005775 ORTHO05D000023 2.7e-81 307.0 508 44.1
unitig_21.g20288 Utricularia gibba HOM05D005775 ORTHO05D000023 6.7e-80 302.4 471 54.1
Ca_02584_v3 Cicer arietinum L. HOM05D005775 ORTHO05D000023 3.3e-79 300.1 514 50.8
Aa31LG1G29420 Aethionema arabicum HOM05D005775 ORTHO05D000023 2.2e-78 297.4 526 48.5
AT2G48000 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 4.8e-78 296.2 509 50.5
C04p19810 Brassica napus HOM05D005775 ORTHO05D000023 6.3e-78 295.8 450 39.8
Atru.BG.65.p Acer truncatum HOM05D005775 ORTHO05D000023 1.4e-77 294.7 351 66.4
CARHR143390 Cardamine hirsuta HOM05D005775 ORTHO05D000023 4.1e-77 293.1 418 56.9
TPR.G16641 Trifolium pratense HOM05D005775 ORTHO05D000023 5.3e-77 292.7 483 50.3
PSO302G0009 Papaver somniferum HOM05D005775 ORTHO05D000023 2.1e-73 280.8 379 59.6
Os05g0407900 Oryza sativa ssp. japonica HOM05D005775 ORTHO05D000023 2.2e-70 270.8 435 51.5
Zm00001eb287820 Zea mays HOM05D005775 ORTHO05D000023 9.1e-69 265.4 428 54.7
BcaB02g10341 Brassica carinata HOM05D005775 ORTHO05D000023 2.9e-67 260.4 443 45.8
SEGI_28259 Sequoiadendron giganteum HOM05D005775 ORTHO05D000023 2.5e-66 257.3 426 51.4
HPP92_003166 Vanilla planifolia HOM05D005775 ORTHO05D000023 1.2e-65 255.0 468 44.0
ClCG00G000230 Citrullus lanatus HOM05D005775 ORTHO05D000023 4.0e-64 250.0 189 66.7
MD11G1295800 Malus domestica HOM05D005775 ORTHO05D000023 1.2e-60 238.4 294 67.3
PSO675G7470 Papaver somniferum HOM05D005775 ORTHO05D000023 8.3e-54 215.7 316 61.4
Nn5g27607 Nelumbo nucifera HOM05D005775 ORTHO05D000023 1.2e-49 201.8 369 53.4
MD11G1295900 Malus domestica HOM05D005775 ORTHO05D000023 4.4e-39 166.8 126 65.1
Actinidia00716 Actinidia chinensis HOM05D005775 ORTHO05D000023 2.2e-38 164.5 255 40.8
CDE10G1068 Ceratophyllum demersum HOM05D005775 ORTHO05D000023 9.2e-37 159.1 193 46.1
Actinidia24862 Actinidia chinensis HOM05D005775 ORTHO05D000023 4.3e-34 150.2 311 33.4
AL4G47600 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 9.9e-31 139.0 164 45.7
BolC4t23514H Brassica oleracea HOM05D005775 ORTHO05D000023 3.0e-27 127.5 128 51.6
AagrBONN_evm.TU.Sc2ySwM_369.313 Anthoceros agrestis HOM05D005775 ORTHO05D000023 1.3e-17 95.5 350 39.7
Manes.05G070650 Manihot esculenta HOM05D005775 ORTHO05D000023 7.1e-13 79.7 112 46.4
Nitab4.5_0006715g0010 Nicotiana tabacum HOM05D005775 ORTHO05D000023 1.0e-11 75.9 120 37.5
Pp3c1_37670 Physcomitrium patens HOM05D005775 ORTHO05D000023 1.0e-11 75.9 152 33.6
Pp3c2_3210 Physcomitrium patens HOM05D005775 ORTHO05D000023 2.3e-11 74.7 414 37.2
SHI15423 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-08 65.9 97 42.3
SGA_v2.0_scaffold44G16880 Striga asiatica HOM05D005862 ORTHO05D007731 2.4e-08 64.7 168 31.0
MD17G1195500 Malus domestica HOM05D006749 ORTHO05D008352 3.1e-08 64.3 114 32.5
Mapoly0072s0009 Marchantia polymorpha HOM05D005775 ORTHO05D000023 3.1e-08 64.3 120 33.3
Prupe.3G071400 Prunus persica HOM05D006749 ORTHO05D008352 3.1e-08 64.3 101 33.7
SEGI_11609 Sequoiadendron giganteum HOM05D008234 ORTHO05D010422 5.3e-08 63.5 116 29.3
SalBow2G3072 Salvia bowleyana HOM05D006749 ORTHO05D008352 6.9e-08 63.2 99 33.3
Haze_16431 Corylus avellana HOM05D006749 ORTHO05D008352 1.2e-07 62.4 99 32.3
Cfa002064 Carpinus fangiana HOM05D006749 ORTHO05D008352 2.0e-07 61.6 99 32.3
Sabra01G0146900 Salix brachista HOM05D006749 ORTHO05D008352 2.0e-07 61.6 99 28.3
FvH4_6g31160 Fragaria vesca HOM05D006749 ORTHO05D008352 4.5e-07 60.5 99 32.3
Nitab4.5_0002302g0060 Nicotiana tabacum HOM05D005862 ORTHO05D007731 4.5e-07 60.5 166 30.1
TWI75G1451 Tripterygium wilfordii HOM05D006749 ORTHO05D008352 4.5e-07 60.5 99 31.3
CSS0041877 Camellia sinensis var. sinensis HOM05D005862 ORTHO05D007731 7.6e-07 59.7 166 29.5
QL05p024247 Quercus lobata HOM05D006749 ORTHO05D008352 7.6e-07 59.7 99 31.3
FAN09G1040 Fragaria x ananassa HOM05D006749 ORTHO05D008352 9.9e-07 59.3 99 30.3
Nitab4.5_0000021g0260 Nicotiana tabacum HOM05D005862 ORTHO05D007731 9.9e-07 59.3 166 29.5
EL10Ac3g06117 Beta vulgaris HOM05D005862 ORTHO05D007731 1.3e-06 58.9 166 28.9
PSO229G0046 Papaver somniferum HOM05D006749 ORTHO05D008352 1.3e-06 58.9 87 33.3
Peaxi162Scf00034g00085 Petunia axillaris HOM05D006749 ORTHO05D008352 1.3e-06 58.9 142 26.1
Peaxi162Scf01650g00056 Petunia axillaris HOM05D005862 ORTHO05D007731 1.3e-06 58.9 166 28.9
Cpa.g.sc68.20 Carica papaya HOM05D006749 ORTHO05D008352 1.7e-06 58.5 101 30.7
SalBow4G3068 Salvia bowleyana HOM05D005862 ORTHO05D007731 1.7e-06 58.5 174 29.3
MSTRG.26941 Avicennia marina HOM05D005862 ORTHO05D007731 2.2e-06 58.2 169 29.0
Migut.F00109 Erythranthe guttata HOM05D005862 ORTHO05D007731 2.2e-06 58.2 174 27.6
PSO675G3775 Papaver somniferum HOM05D006749 ORTHO05D008352 2.2e-06 58.2 87 32.2
FAN02G2386 Fragaria x ananassa HOM05D006749 ORTHO05D008352 2.9e-06 57.8 99 30.3
FAN05G1436 Fragaria x ananassa HOM05D006749 ORTHO05D008352 2.9e-06 57.8 99 30.3
Phvul.005G171500 Phaseolus vulgaris HOM05D006749 ORTHO05D008352 3.8e-06 57.4 142 26.8
AagrBONN_evm.TU.Sc2ySwM_117.627 Anthoceros agrestis HOM05D006414 ORTHO05D007780 4.9e-06 57.0 127 29.9
MD07G1304500 Malus domestica HOM05D005862 ORTHO05D007731 4.9e-06 57.0 171 29.2
Sc25g0001110 Simmondsia chinensis HOM05D005862 ORTHO05D007731 4.9e-06 57.0 166 30.1
arahy.Tifrunner.gnm1.ann1.B0Y075 Arachis hypogaea HOM05D005862 ORTHO05D007731 6.4e-06 56.6 171 28.1
arahy.Tifrunner.gnm1.ann1.LMCB5G Arachis hypogaea HOM05D005862 ORTHO05D007731 6.4e-06 56.6 171 28.1
CBR_g41643 Chara braunii HOM05D005862 ORTHO05D007731 6.4e-06 56.6 148 29.7
Lj2C679T3 Lonicera japonica HOM05D005862 ORTHO05D007731 6.4e-06 56.6 174 27.6
Atru.chr12.2038 Acer truncatum HOM05D005862 ORTHO05D007731 8.4e-06 56.2 172 29.7
arahy.Tifrunner.gnm1.ann1.UAU06L Arachis hypogaea HOM05D005862 ORTHO05D007731 8.4e-06 56.2 171 28.1
Cc02_g11880 Coffea canephora HOM05D000891 ORTHO05D000761 8.4e-06 56.2 125 30.4
Medtr5g008300 Medicago truncatula HOM05D005862 ORTHO05D007731 8.4e-06 56.2 175 28.0
Psat2g187320 Pisum sativum HOM05D005862 ORTHO05D007731 8.4e-06 56.2 80 37.5
PGR102G0966 Punica granatum HOM05D006749 ORTHO05D008352 8.4e-06 56.2 97 32.0
Sc10g0007430 Simmondsia chinensis HOM05D006749 ORTHO05D008352 8.4e-06 56.2 106 26.4


User provided reference genes

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