Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 3.4e-33 144.4 74 100.0
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.6e-17 91.7 76 68.4
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 9.9e-17 89.7 55 85.5
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 6.4e-16 87.0 78 65.4
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 3.2e-15 84.7 63 71.4
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 4.2e-15 84.3 64 71.9
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 1.2e-14 82.8 62 72.6
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 2.7e-14 81.6 45 86.7
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 3.5e-14 81.3 66 69.7
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 4.6e-14 80.9 62 72.6
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 6.0e-14 80.5 67 62.7
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 6.0e-14 80.5 67 62.7
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 6.0e-14 80.5 64 64.1
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 1.0e-13 79.7 66 68.2
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 2.3e-13 78.6 54 72.2
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 3.9e-13 77.8 56 75.0
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.1e-13 77.4 56 71.4
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 6.7e-13 77.0 44 84.1
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 6.7e-13 77.0 57 66.7
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 6.7e-13 77.0 62 66.1
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 8.7e-13 76.6 56 66.1
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 8.7e-13 76.6 74 56.8
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 8.7e-13 76.6 61 63.9
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 1.5e-12 75.9 63 65.1
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 1.5e-12 75.9 59 71.2
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 1.9e-12 75.5 62 67.7
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.9e-12 75.5 62 67.7
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.9e-12 75.5 62 67.7
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.9e-12 75.5 65 63.1
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.9e-12 75.5 71 60.6
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.9e-12 75.5 56 76.8
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 1.9e-12 75.5 69 59.4
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 1.9e-12 75.5 57 66.7
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 2.5e-12 75.1 61 67.2
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 3.3e-12 74.7 57 61.4
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 4.3e-12 74.3 56 69.6
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 5.6e-12 73.9 49 75.5
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.6e-12 73.9 59 64.4
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 7.4e-12 73.6 71 56.3
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 9.6e-12 73.2 65 63.1
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.3e-11 72.8 66 59.1
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 1.3e-11 72.8 52 69.2
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 1.3e-11 72.8 64 60.9
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.3e-11 72.8 56 66.1
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 2.1e-11 72.0 43 81.4
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 2.8e-11 71.6 48 72.9
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 4.8e-11 70.9 60 61.7
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 6.2e-11 70.5 56 64.3
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 8.1e-11 70.1 48 68.8
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 1.1e-10 69.7 58 62.1
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 1.4e-10 69.3 66 59.1
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.8e-10 68.9 49 69.4
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.8e-10 68.9 49 69.4
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.8e-10 68.9 49 69.4
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.8e-10 68.9 49 69.4
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.8e-10 68.9 44 75.0
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.8e-10 68.9 59 62.7
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 1.8e-10 68.9 64 57.8
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 1.8e-10 68.9 62 58.1
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.8e-10 68.9 51 66.7
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 2.4e-10 68.6 47 72.3
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 2.4e-10 68.6 68 61.8
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 3.1e-10 68.2 59 61.0
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 5.3e-10 67.4 37 86.5
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 6.9e-10 67.0 55 61.8
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 6.9e-10 67.0 47 68.1
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 6.9e-10 67.0 49 67.3
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 6.9e-10 67.0 49 67.3
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 6.9e-10 67.0 53 69.8
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 6.9e-10 67.0 57 57.9
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 9.0e-10 66.6 43 76.7
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 9.0e-10 66.6 68 54.4
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 1.2e-09 66.2 54 63.0
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 2.0e-09 65.5 43 72.1
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 2.6e-09 65.1 67 59.7
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 3.4e-09 64.7 61 57.4
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 4.5e-09 64.3 62 54.8
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 5.8e-09 63.9 53 62.3
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 1.3e-08 62.8 44 70.5
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 1.3e-08 62.8 66 57.6
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 1.3e-08 62.8 43 69.8
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 6.5e-08 60.5 65 56.9
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 6.5e-08 60.5 61 55.7
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 1.9e-07 58.9 38 73.7
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 3.2e-07 58.2 66 54.5
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 5.5e-07 57.4 56 57.1
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 4.6e-06 54.3 57 47.4
HanXRQChr10g0282781 Helianthus annuus HOM05D007833 ORTHO05D009855 7.9e-06 53.5 34 70.6


User provided reference genes

Program Settings