Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G200900 Manihot esculenta HOM05D005373 ORTHO05D006617 4.2e-53 211.1 104 100.0
Potri.002G043600 Populus trichocarpa HOM05D005373 ORTHO05D006617 5.1e-51 204.1 104 96.2
Potri.005G219400 Populus trichocarpa HOM05D005373 ORTHO05D006617 2.5e-50 201.8 104 94.2
Cfa002338 Carpinus fangiana HOM05D005373 ORTHO05D006617 1.6e-49 199.1 104 93.3
QL12p042863 Quercus lobata HOM05D005373 ORTHO05D006617 1.6e-49 199.1 103 93.2
COL.COLO4_08280 Corchorus olitorius HOM05D005373 ORTHO05D006617 2.8e-49 198.4 104 91.3
COL.COLO4_29457 Corchorus olitorius HOM05D005373 ORTHO05D006617 2.8e-49 198.4 104 91.3
EL10Ac1g00710 Beta vulgaris HOM05D005373 ORTHO05D006617 4.8e-49 197.6 104 91.3
QL04p081438 Quercus lobata HOM05D005373 ORTHO05D006617 4.8e-49 197.6 103 92.2
CiPaw.02G033000 Carya illinoinensis HOM05D005373 ORTHO05D006617 6.2e-49 197.2 104 93.3
CiPaw.04G182700 Carya illinoinensis HOM05D005373 ORTHO05D006617 6.2e-49 197.2 104 93.3
Dinv22468 Davidia involucrata HOM05D005373 ORTHO05D006617 6.2e-49 197.2 104 91.3
CSS0017854 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 1.1e-48 196.4 104 91.3
MD05G1204500 Malus domestica HOM05D005373 ORTHO05D006617 1.1e-48 196.4 104 92.3
MD10G1191500 Malus domestica HOM05D005373 ORTHO05D006617 1.1e-48 196.4 104 92.3
Rhsim12G0063100 Rhododendron simsii HOM05D005373 ORTHO05D006617 1.1e-48 196.4 104 90.4
Duzib211G0177 Durio zibethinus HOM05D005373 ORTHO05D006617 1.4e-48 196.1 104 90.4
arahy.Tifrunner.gnm1.ann1.W8F73Z Arachis hypogaea HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 89.4
CARHR157930 Cardamine hirsuta HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 91.3
FvH4_2g22310 Fragaria vesca HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 90.4
FAN20G0018 Fragaria x ananassa HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 90.4
FAN24G2777 Fragaria x ananassa HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 90.4
Prupe.8G230800 Prunus persica HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 90.4
Sc02g0003290 Simmondsia chinensis HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 90.4
Thecc.01G266100 Theobroma cacao HOM05D005373 ORTHO05D006617 2.4e-48 195.3 104 89.4
AT3G49100 Arabidopsis thaliana HOM05D005373 ORTHO05D006617 3.1e-48 194.9 104 90.4
Sp5g12980 Schrenkiella parvula HOM05D005373 ORTHO05D006617 3.1e-48 194.9 104 90.4
AL5G28610 Arabidopsis lyrata HOM05D005373 ORTHO05D006617 5.3e-48 194.1 104 89.4
RcHm_v2.0_Chr6g0289311 Rosa chinensis HOM05D005373 ORTHO05D006617 5.3e-48 194.1 104 90.4
Hund17126 Selenicereus undatus HOM05D005373 ORTHO05D006617 5.3e-48 194.1 104 90.4
Atru.chr5.1594 Acer truncatum HOM05D005373 ORTHO05D006617 6.9e-48 193.7 104 89.4
Carub.0005s1529 Capsella rubella HOM05D005373 ORTHO05D006617 6.9e-48 193.7 104 90.4
Nn1g02594 Nelumbo nucifera HOM05D005373 ORTHO05D006617 6.9e-48 193.7 104 88.5
PGR102G1093 Punica granatum HOM05D005373 ORTHO05D006617 6.9e-48 193.7 104 89.4
THA.LOC104821383 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 6.9e-48 193.7 104 90.4
TPR.G35732 Trifolium pratense HOM05D005373 ORTHO05D006617 6.9e-48 193.7 104 88.5
Actinidia21168 Actinidia chinensis HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 89.4
Actinidia24948 Actinidia chinensis HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 89.4
Gohir.A08G188600 Gossypium hirsutum HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 88.5
Gohir.D08G207000 Gossypium hirsutum HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 88.5
Gorai.004G219200 Gossypium raimondii HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 88.5
Medtr1g070460 Medicago truncatula HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 88.5
PSO832G1599 Papaver somniferum HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 88.5
Rhsim01G0268500 Rhododendron simsii HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 88.5
THA.LOC104818165 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 89.4
GSVIVG01000751001 Vitis vinifera HOM05D005373 ORTHO05D006617 9.0e-48 193.4 104 89.4
Cpa.g.sc52.142 Carica papaya HOM05D005373 ORTHO05D006617 1.2e-47 193.0 104 88.5
AUR62013793 Chenopodium quinoa HOM05D005373 ORTHO05D006617 1.2e-47 193.0 104 88.5
AUR62023362 Chenopodium quinoa HOM05D005373 ORTHO05D006617 1.2e-47 193.0 104 88.5
Lj5g0027817 Lotus japonicus HOM05D005373 ORTHO05D006617 1.5e-47 192.6 104 86.5
Cc01_g18740 Coffea canephora HOM05D005373 ORTHO05D006617 2.0e-47 192.2 104 87.5
Thhalv10010849m.g Eutrema salsugineum HOM05D005373 ORTHO05D006617 2.0e-47 192.2 104 89.4
MBI04_g39243_MAGBIO Magnolia biondii HOM05D005373 ORTHO05D006617 2.0e-47 192.2 104 88.5
FAN15G3255 Fragaria x ananassa HOM05D005373 ORTHO05D006617 2.6e-47 191.8 104 89.4
TAR365G0879 Trochodendron aralioides HOM05D005373 ORTHO05D006617 2.6e-47 191.8 104 88.5
vmacro11045 Vaccinium macrocarpon HOM05D005373 ORTHO05D006617 2.6e-47 191.8 104 88.5
BcaB01g00749 Brassica carinata HOM05D005373 ORTHO05D006617 3.4e-47 191.4 104 88.5
TAR633G1352 Trochodendron aralioides HOM05D005373 ORTHO05D006617 3.4e-47 191.4 104 87.5
BcaC07g39386 Brassica carinata HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 88.5
A06p18650 Brassica napus HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 88.5
C08p24090 Brassica napus HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 88.5
BolC8t50030H Brassica oleracea HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 88.5
BraA06t24943Z Brassica rapa HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 88.5
Ciclev10023009m.g Citrus clementina HOM05D005373 ORTHO05D006617 4.4e-47 191.0 104 88.5
Gorai.007G142700 Gossypium raimondii HOM05D005373 ORTHO05D006617 5.8e-47 190.7 104 90.4
Psat4g197520 Pisum sativum HOM05D005373 ORTHO05D006617 5.8e-47 190.7 104 87.5
Aa31LG4G17560 Aethionema arabicum HOM05D005373 ORTHO05D006617 1.3e-46 189.5 105 89.5
CANSAT01G0877 Cannabis sativa HOM05D005373 ORTHO05D006617 1.3e-46 189.5 104 86.5
ClCG07G000650 Citrullus lanatus HOM05D005373 ORTHO05D006617 1.3e-46 189.5 104 87.5
MELO3C014306.2 Cucumis melo HOM05D005373 ORTHO05D006617 1.3e-46 189.5 104 87.5
CsaV3_2G013670 Cucumis sativus L. HOM05D005373 ORTHO05D006617 1.3e-46 189.5 104 87.5
Peaxi162Scf00700g00135 Petunia axillaris HOM05D005373 ORTHO05D006617 1.3e-46 189.5 104 88.5
Sed0003924 Sechium edule HOM05D005373 ORTHO05D006617 1.3e-46 189.5 104 86.5
Oeu002282.1 Olea europaea HOM05D001069 ORTHO05D001549 1.7e-46 189.1 104 85.6
Aqoxy2G03557 Aquilegia oxysepala HOM05D005373 ORTHO05D006617 2.2e-46 188.7 104 85.6
Solyc12g099820.1 Solanum lycopersicum HOM05D005373 ORTHO05D006617 2.2e-46 188.7 104 89.4
Sopen12g034450 Solanum pennellii HOM05D005373 ORTHO05D006617 2.2e-46 188.7 104 89.4
BcaB02g09576 Brassica carinata HOM05D005373 ORTHO05D006617 2.9e-46 188.3 104 86.5
CSS0009352 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 2.9e-46 188.3 104 87.5
Eucgr.B01502 Eucalyptus grandis HOM05D005373 ORTHO05D006617 2.9e-46 188.3 104 88.5
Lalb_Chr19g0125981 Lupinus albus HOM05D005373 ORTHO05D006617 2.9e-46 188.3 104 83.7
BraA06t25747Z Brassica rapa HOM05D005373 ORTHO05D006617 3.8e-46 188.0 104 86.5
CANSAT11G1068 Cannabis sativa HOM05D005373 ORTHO05D006617 3.8e-46 188.0 104 85.6
A06p28050 Brassica napus HOM05D005373 ORTHO05D006617 4.9e-46 187.6 104 86.5
DCAR_012520 Daucus carota HOM05D005373 ORTHO05D006617 4.9e-46 187.6 104 87.5
Dinv34577 Davidia involucrata HOM05D005373 ORTHO05D006617 4.9e-46 187.6 104 86.5
ATR0665G560 Amborella trichopoda HOM05D005373 ORTHO05D006617 6.4e-46 187.2 104 85.6
Lalb_Chr03g0041301 Lupinus albus HOM05D005373 ORTHO05D006617 6.4e-46 187.2 104 83.7
Phvul.008G134200 Phaseolus vulgaris HOM05D005373 ORTHO05D006617 6.4e-46 187.2 104 83.7
TPR.G2468 Trifolium pratense HOM05D005373 ORTHO05D006617 6.4e-46 187.2 104 84.6
Glyma.08G346000 Glycine max HOM05D005373 ORTHO05D006617 1.1e-45 186.4 104 83.7
TWI18G0681 Tripterygium wilfordii HOM05D005373 ORTHO05D006617 1.1e-45 186.4 104 83.7
Duzib138G0987 Durio zibethinus HOM05D005373 ORTHO05D006617 1.4e-45 186.0 105 87.6
Glyma.18G156300 Glycine max HOM05D005373 ORTHO05D006617 1.4e-45 186.0 104 83.7
MSTRG.18297 Avicennia marina HOM05D005373 ORTHO05D006617 1.9e-45 185.7 104 83.7
Nn3g19526 Nelumbo nucifera HOM05D005373 ORTHO05D006617 1.9e-45 185.7 110 82.7
PGSC0003DMG400004717 Solanum tuberosum HOM05D005373 ORTHO05D006617 2.4e-45 185.3 106 88.7
BcaC01g02388 Brassica carinata HOM05D005373 ORTHO05D006617 3.2e-45 184.9 104 85.6
BolC3t18839H Brassica oleracea HOM05D005373 ORTHO05D006617 3.2e-45 184.9 104 85.6
Glyma.02G141101 Glycine max HOM05D005373 ORTHO05D006617 3.2e-45 184.9 104 85.6
CAN.G575.93 Capsicum annuum HOM05D005373 ORTHO05D006617 4.2e-45 184.5 104 88.5
SGA_v2.0_scaffold1G00570 Striga asiatica HOM05D005373 ORTHO05D006617 5.4e-45 184.1 104 83.7
Migut.D00388 Erythranthe guttata HOM05D005373 ORTHO05D006617 7.1e-45 183.7 104 83.7
Haze_24544 Corylus avellana HOM05D005373 ORTHO05D006617 9.3e-45 183.3 130 73.8
Glyma.10G032800 Glycine max HOM05D005373 ORTHO05D006617 9.3e-45 183.3 104 83.7
C03p65820 Brassica napus HOM05D005373 ORTHO05D006617 1.6e-44 182.6 104 84.6
Nitab4.5_0002310g0090 Nicotiana tabacum HOM05D005373 ORTHO05D006617 1.6e-44 182.6 104 85.6
arahy.Tifrunner.gnm1.ann1.ZBI3RA Arachis hypogaea HOM05D005373 ORTHO05D006617 2.1e-44 182.2 130 72.3
SalBow4G0280 Salvia bowleyana HOM05D005373 ORTHO05D006617 2.7e-44 181.8 104 81.7
unitig_26.g10142 Utricularia gibba HOM05D005373 ORTHO05D006617 2.7e-44 181.8 104 82.7
Zm00001eb281280 Zea mays HOM05D005373 ORTHO05D006617 2.7e-44 181.8 103 82.5
SGA_v2.0_scaffold138G35268 Striga asiatica HOM05D005373 ORTHO05D006617 4.6e-44 181.0 104 82.7
PSO063G5966 Papaver somniferum HOM05D005373 ORTHO05D006617 7.9e-44 180.3 104 85.6
Zm00001eb379840 Zea mays HOM05D005373 ORTHO05D006617 2.3e-43 178.7 104 82.7
Lsat_1_v5_gn_5_186641 Lactuca sativa HOM05D005373 ORTHO05D006617 3.0e-43 178.3 104 84.6
HPP92_008005 Vanilla planifolia HOM05D005373 ORTHO05D006617 5.1e-43 177.6 104 81.7
HanXRQChr01g0005311 Helianthus annuus HOM05D005373 ORTHO05D006617 2.5e-42 175.3 104 83.7
HanXRQChr06g0164391 Helianthus annuus HOM05D005373 ORTHO05D006617 2.5e-42 175.3 104 83.7
MSTRG.21508 Avicennia marina HOM05D005373 ORTHO05D006617 5.6e-42 174.1 104 80.8
ECA248G2609 Erigeron canadensis HOM05D005373 ORTHO05D006617 7.3e-42 173.7 104 81.7
Migut.N02186 Erythranthe guttata HOM05D005373 ORTHO05D006617 3.6e-41 171.4 104 77.9
Ah.05g177620 Amaranthus hybridus HOM05D005373 ORTHO05D006617 1.5e-39 166.0 167 55.7
AagrBONN_evm.TU.Sc2ySwM_344.4653 Anthoceros agrestis HOM05D005373 ORTHO05D006617 7.6e-39 163.7 104 76.0
Hma1.2p1_1029F.1_g249680 Hydrangea macrophylla HOM05D005373 ORTHO05D006617 5.4e-37 157.5 78 93.6
Mapoly0042s0050 Marchantia polymorpha HOM05D005373 ORTHO05D006617 7.1e-37 157.1 104 71.2
Pp3c14_7880 Physcomitrium patens HOM05D005373 ORTHO05D006617 2.3e-35 152.1 104 71.2
CDE06G2230 Ceratophyllum demersum HOM05D005373 ORTHO05D006617 8.7e-35 150.2 88 81.8
Sabra02G0035300 Salix brachista HOM05D005373 ORTHO05D006617 1.9e-34 149.1 91 84.6
Pp3c2_1790 Physcomitrium patens HOM05D005373 ORTHO05D006617 2.1e-33 145.6 104 66.3
CSS0047138 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 6.2e-33 144.1 104 73.1
Gohir.D11G133500 Gossypium hirsutum HOM05D005373 ORTHO05D006617 4.5e-31 137.9 76 90.8
Gohir.A11G127860 Gossypium hirsutum HOM05D005373 ORTHO05D006617 6.5e-30 134.0 76 89.5
CBR_g18652 Chara braunii HOM05D005373 ORTHO05D006617 1.3e-27 126.3 104 61.5
Atru.chr7.944 Acer truncatum HOM05D005373 ORTHO05D006617 9.0e-24 113.6 57 91.2
Sed0007692 Sechium edule HOM05D005373 ORTHO05D006617 1.1e-21 106.7 79 69.6
Gohir.A12G149900 Gossypium hirsutum HOM05D005373 ORTHO05D006617 4.6e-20 101.3 57 86.0
Atru.chr2.3918 Acer truncatum HOM05D005373 ORTHO05D006617 1.0e-19 100.1 68 77.9
PRCOL_00002130 Prasinoderma coloniale HOM05D005373 ORTHO05D006617 4.1e-16 88.2 75 50.7
TWI36G0734 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 4.1e-16 88.2 56 76.8
Cre12.g546250 Chlamydomonas reinhardtii HOM05D005373 ORTHO05D006617 5.3e-16 87.8 75 50.7
Gohir.A10G156200 Gossypium hirsutum HOM05D005373 ORTHO05D006617 6.9e-16 87.4 55 81.8
CSS0032008 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 2.6e-15 85.5 53 79.2
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 7.2e-13 77.4 53 77.4


User provided reference genes

Program Settings