Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 4.4e-82 307.8 140 100.0
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 5.0e-70 267.7 128 93.8
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 5.6e-69 264.2 128 93.0
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 2.1e-68 262.3 128 91.4
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 3.6e-68 261.5 128 90.6
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 4.7e-68 261.2 128 90.6
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 4.7e-68 261.2 128 90.6
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 6.2e-68 260.8 128 89.8
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 8.0e-68 260.4 128 91.4
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 8.0e-68 260.4 128 91.4
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.0e-68 260.4 128 90.6
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.0e-68 260.4 128 90.6
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 8.0e-68 260.4 128 89.8
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.0e-67 260.0 128 89.8
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 1.4e-67 259.6 128 89.8
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.4e-67 259.6 128 90.6
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 1.4e-67 259.6 128 89.8
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.3e-67 258.8 128 89.1
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 3.1e-67 258.5 128 89.8
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 3.1e-67 258.5 128 89.8
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 4.0e-67 258.1 128 89.8
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 4.0e-67 258.1 128 89.8
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 4.0e-67 258.1 128 89.8
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 4.0e-67 258.1 128 89.8
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 4.0e-67 258.1 128 89.8
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 4.0e-67 258.1 128 89.8
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 5.2e-67 257.7 128 89.1
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 8.9e-67 256.9 128 91.4
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 8.9e-67 256.9 128 89.1
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 8.9e-67 256.9 128 89.1
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.9e-67 256.9 128 89.1
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.2e-66 256.5 128 89.1
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 1.2e-66 256.5 128 89.8
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 1.5e-66 256.1 128 89.1
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.5e-66 256.1 128 87.5
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.5e-66 256.1 129 89.1
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.5e-66 256.1 129 89.1
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 2.0e-66 255.8 128 89.8
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.0e-66 255.8 128 87.5
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.0e-66 255.8 128 87.5
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.0e-66 255.8 128 87.5
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.0e-66 255.8 128 88.3
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 2.0e-66 255.8 128 88.3
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 2.0e-66 255.8 128 88.3
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 2.0e-66 255.8 128 88.3
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 88.3
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 88.3
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 87.5
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 87.5
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 87.5
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 87.5
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 89.1
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 88.3
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 88.3
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 87.5
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 89.1
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 2.6e-66 255.4 128 87.5
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 3.4e-66 255.0 128 88.3
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 3.4e-66 255.0 128 86.7
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 4.4e-66 254.6 128 88.3
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 4.4e-66 254.6 128 86.7
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 4.4e-66 254.6 128 87.5
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 4.4e-66 254.6 128 86.7
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 4.4e-66 254.6 128 88.3
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 4.4e-66 254.6 128 88.3
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 4.4e-66 254.6 128 88.3
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 5.8e-66 254.2 128 87.5
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 5.8e-66 254.2 128 87.5
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 5.8e-66 254.2 128 87.5
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 5.8e-66 254.2 128 87.5
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 5.8e-66 254.2 128 89.1
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 7.5e-66 253.8 128 88.3
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 9.8e-66 253.4 128 87.5
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.8e-66 253.4 128 87.5
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.8e-66 253.4 128 87.5
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.8e-66 253.4 128 87.5
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 9.8e-66 253.4 128 87.5
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 9.8e-66 253.4 128 87.5
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.3e-65 253.1 128 88.3
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.3e-65 253.1 128 88.3
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.3e-65 253.1 128 87.5
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.3e-65 253.1 128 86.7
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.7e-65 252.7 128 87.5
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.7e-65 252.7 128 87.5
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.7e-65 252.7 128 87.5
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 1.7e-65 252.7 128 85.9
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 2.2e-65 252.3 128 87.5
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 2.2e-65 252.3 128 86.7
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 2.2e-65 252.3 128 87.5
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.2e-65 252.3 128 86.7
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 2.2e-65 252.3 128 86.7
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.9e-65 251.9 128 87.5
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.9e-65 251.9 128 87.5
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 2.9e-65 251.9 128 86.7
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 3.7e-65 251.5 128 88.3
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 4.9e-65 251.1 128 85.9
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 4.9e-65 251.1 128 86.7
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 6.4e-65 250.8 128 88.3
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 6.4e-65 250.8 128 85.9
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 6.4e-65 250.8 128 85.9
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 8.3e-65 250.4 128 87.5
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 8.3e-65 250.4 128 85.2
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 8.3e-65 250.4 128 85.9
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 8.3e-65 250.4 136 83.8
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.9e-64 249.2 128 85.9
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 2.4e-64 248.8 128 85.2
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 2.4e-64 248.8 128 85.2
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 2.4e-64 248.8 128 85.2
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 2.4e-64 248.8 128 85.2
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 2.4e-64 248.8 128 85.2
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.4e-64 248.8 140 81.4
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 5.4e-64 247.7 128 84.4
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 5.4e-64 247.7 128 84.4
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 5.4e-64 247.7 128 84.4
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 7.0e-64 247.3 128 84.4
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 9.2e-64 246.9 128 84.4
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 9.2e-64 246.9 128 85.2
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 9.2e-64 246.9 128 85.2
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 9.2e-64 246.9 128 84.4
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 1.2e-63 246.5 128 84.4
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 1.2e-63 246.5 128 84.4
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 1.6e-63 246.1 128 85.2
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 1.6e-63 246.1 128 85.2
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 2.0e-63 245.7 128 84.4
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 2.0e-63 245.7 128 84.4
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 2.0e-63 245.7 128 84.4
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 2.7e-63 245.4 128 83.6
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 3.5e-63 245.0 128 86.7
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.5e-63 245.0 148 77.0
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 6.0e-63 244.2 128 83.6
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 6.0e-63 244.2 128 83.6
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 6.0e-63 244.2 128 82.8
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 7.8e-63 243.8 119 90.8
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 2.3e-62 242.3 128 83.6
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 6.6e-62 240.7 128 82.0
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 1.1e-61 240.0 128 82.0
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.1e-61 240.0 128 83.6
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 2.5e-61 238.8 128 82.0
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 9.5e-61 236.9 128 83.6
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 5.2e-59 231.1 141 74.5
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 3.4e-58 228.4 128 76.6
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.5e-58 227.3 129 82.2
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 2.2e-57 225.7 194 58.2
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.4e-56 223.0 128 79.7
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 2.7e-55 218.8 110 86.4
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 2.3e-54 215.7 109 88.1
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 2.3e-54 215.7 107 89.7
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.1e-51 206.8 109 82.6
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.8e-51 206.1 128 74.2
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 4.0e-51 204.9 111 82.0
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.7e-47 192.2 115 78.3
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.7e-46 189.5 131 69.5
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 1.2e-34 150.2 134 47.0
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 1.9e-32 142.9 69 87.0
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.4e-32 142.5 129 56.6
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.1e-31 139.4 65 92.3
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 1.0e-30 137.1 128 55.5
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.0e-30 137.1 128 55.5
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 2.3e-30 136.0 116 49.1
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.7e-30 134.4 65 89.2
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 1.1e-29 133.7 128 54.7
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.4e-29 131.0 65 87.7
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.6e-28 129.8 78 75.6
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.1e-28 129.4 140 48.6
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 6.2e-28 127.9 62 88.7
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.2e-28 127.9 62 88.7
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 2.4e-27 125.9 62 87.1
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.3e-27 124.8 62 87.1
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.3e-27 124.8 62 87.1
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.3e-27 124.8 62 87.1
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.3e-27 124.8 62 87.1
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.3e-27 124.8 62 87.1
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.3e-27 124.8 62 87.1
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.3e-27 124.8 62 87.1
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.3e-27 124.8 62 87.1
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 9.0e-27 124.0 62 87.1
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 2.7e-23 112.5 60 88.3
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.5e-23 112.1 62 82.3
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.6e-20 103.2 54 83.3
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 1.4e-19 100.1 52 88.5
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 3.4e-18 95.5 52 82.7


User provided reference genes

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