Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 8.0e-230 800.0 398 100.0
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 8.4e-171 604.0 341 86.5
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 2.5e-162 575.9 402 70.9
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 4.2e-162 575.1 408 70.3
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 3.5e-161 572.0 398 72.6
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 2.3e-160 569.3 408 71.6
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 5.1e-160 568.2 410 71.0
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 1.5e-159 566.6 421 67.7
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 1.9e-159 566.2 410 72.2
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 4.3e-159 565.1 408 70.8
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 7.4e-159 564.3 398 70.6
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.6e-158 563.1 409 71.4
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 4.8e-158 561.6 403 70.0
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 4.1e-157 558.5 409 70.2
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 5.3e-157 558.1 409 69.9
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 6.9e-157 557.8 404 69.3
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 9.0e-157 557.4 408 70.1
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 2.0e-156 556.2 411 70.1
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.1e-154 550.4 412 69.9
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 4.2e-154 548.5 408 68.9
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 5.5e-154 548.1 407 68.6
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 7.2e-154 547.7 405 69.6
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 9.4e-154 547.4 407 68.3
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 1.2e-153 547.0 407 68.6
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 3.6e-153 545.4 408 67.9
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 3.6e-153 545.4 408 67.4
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 7.9e-153 544.3 407 67.1
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.0e-152 543.9 430 66.5
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 1.4e-152 543.5 409 68.2
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 1.8e-152 543.1 407 67.6
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 2.3e-152 542.7 402 67.7
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 3.0e-152 542.3 404 68.3
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 3.0e-152 542.3 415 66.7
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.1e-151 540.4 390 70.8
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 1.1e-151 540.4 400 69.2
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 2.5e-151 539.3 406 67.0
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 4.3e-151 538.5 395 68.1
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 9.7e-151 537.3 349 77.1
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 9.7e-151 537.3 408 67.2
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 2.8e-150 535.8 395 67.1
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 4.8e-150 535.0 430 65.8
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 1.1e-149 533.9 395 67.1
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 1.1e-149 533.9 407 66.1
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 1.1e-149 533.9 406 66.3
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 4.1e-149 531.9 402 66.9
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 5.3e-149 531.6 404 67.3
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 5.3e-149 531.6 401 67.8
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 6.9e-149 531.2 404 66.8
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 2.6e-148 529.3 402 66.9
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 3.4e-148 528.9 406 66.0
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 4.5e-148 528.5 409 64.5
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 1.0e-147 527.3 404 66.3
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 2.2e-147 526.2 356 71.9
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 2.2e-147 526.2 405 65.9
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 3.8e-147 525.4 409 63.8
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 8.5e-147 524.2 409 65.3
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 8.5e-147 524.2 481 58.8
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 1.9e-146 523.1 400 66.2
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 2.5e-146 522.7 403 65.5
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 3.2e-146 522.3 339 75.5
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 9.4e-146 520.8 398 66.3
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 9.4e-146 520.8 405 65.2
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 9.4e-146 520.8 405 66.2
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 1.2e-145 520.4 418 64.8
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 2.1e-145 519.6 402 65.7
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 3.6e-145 518.8 402 65.7
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 3.6e-145 518.8 405 65.2
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 1.0e-144 517.3 405 65.4
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 2.3e-144 516.2 403 65.8
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 3.0e-144 515.8 340 74.1
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 5.1e-144 515.0 358 71.5
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 2.0e-143 513.1 447 60.6
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 3.3e-143 512.3 347 72.0
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 3.3e-143 512.3 405 64.0
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 9.7e-143 510.8 405 64.0
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 1.3e-142 510.4 409 63.1
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 2.2e-142 509.6 405 63.5
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.7e-142 508.8 392 66.1
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 3.7e-142 508.8 379 67.3
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 3.7e-142 508.8 379 67.3
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 3.7e-142 508.8 405 64.4
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 1.4e-141 506.9 404 63.4
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 2.4e-141 506.1 413 63.0
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 3.1e-141 505.8 417 63.3
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 4.1e-141 505.4 404 65.6
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 5.3e-141 505.0 407 63.4
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 7.0e-141 504.6 398 63.1
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 9.1e-141 504.2 407 64.4
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 9.1e-141 504.2 401 62.8
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.5e-140 503.4 392 66.8
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 3.5e-140 502.3 406 62.8
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 7.7e-140 501.1 341 71.8
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 2.2e-139 499.6 405 62.7
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 2.2e-139 499.6 407 62.7
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 2.9e-139 499.2 415 61.4
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 3.8e-139 498.8 339 72.3
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 3.8e-139 498.8 341 71.6
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 5.0e-139 498.4 448 59.6
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 5.0e-139 498.4 405 63.0
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 5.0e-139 498.4 406 62.3
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 5.0e-139 498.4 405 63.0
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 6.5e-139 498.0 406 62.8
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 6.5e-139 498.0 406 62.8
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 8.5e-139 497.7 413 62.2
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 1.1e-138 497.3 405 63.2
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 1.1e-138 497.3 405 63.2
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 1.5e-138 496.9 415 61.2
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 4.2e-138 495.4 406 62.6
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 5.5e-138 495.0 348 70.1
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 9.4e-138 494.2 393 63.4
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 2.1e-137 493.0 344 70.1
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 3.6e-137 492.3 352 71.3
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.4e-136 490.3 373 67.8
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 1.8e-136 490.0 405 60.7
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 3.7e-134 482.3 433 58.7
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 3.7e-134 482.3 396 61.6
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 2.4e-133 479.6 392 61.7
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 7.0e-133 478.0 404 60.1
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 5.9e-132 474.9 407 60.2
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 1.7e-131 473.4 405 61.2
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 2.9e-131 472.6 397 59.4
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 6.8e-128 461.5 405 58.8
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 2.6e-127 459.5 312 71.8
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 2.9e-123 446.0 386 59.8
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 9.5e-114 414.5 292 71.6
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 2.1e-113 413.3 337 61.7
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 3.5e-100 369.4 389 47.6
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 8.3e-94 348.2 321 52.6
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 1.2e-92 344.4 351 47.9
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 1.6e-89 334.0 298 58.1
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 8.1e-89 331.6 195 82.1
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 1.2e-87 327.8 348 46.8
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 1.1e-82 311.2 333 47.7
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 4.4e-79 299.3 272 53.3
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 7.1e-77 292.0 243 63.8
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 2.8e-73 280.0 284 53.2
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 3.6e-73 279.6 222 64.9
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 9.3e-69 265.0 344 44.8
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.9e-50 204.1 178 59.0
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 1.3e-49 201.4 185 60.5
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 1.7e-46 191.0 154 58.4
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 5.5e-45 186.0 309 36.9
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 4.2e-37 159.8 318 33.0
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 2.4e-32 144.1 109 64.2
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 1.5e-31 141.4 109 64.2
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 1.4e-29 134.8 312 30.8
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 8.8e-27 125.6 77 76.6
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.1e-24 117.1 89 66.3
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 2.6e-23 114.0 61 83.6
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.1e-21 108.6 59 81.4
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 3.6e-20 103.6 61 77.0
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 2.3e-19 100.9 69 73.9
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 2.0e-18 97.8 130 44.6
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 3.7e-17 93.6 64 68.8
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 5.3e-16 89.7 68 61.8
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 4.5e-15 86.7 125 43.2
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 6.1e-12 76.3 50 68.0
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 8.8e-11 72.4 120 40.0
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 7.5e-10 69.3 92 43.5
MD15G1252000 Malus domestica HOM05D000363 ORTHO05D000236 2.0e-07 61.2 76 40.8
Medtr5g070470 Medicago truncatula HOM05D000009 ORTHO05D000008 2.0e-07 61.2 119 37.0
MD02G1138500 Malus domestica HOM05D000363 ORTHO05D000236 2.7e-07 60.8 97 37.1
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 5.9e-07 59.7 76 39.5
Prupe.7G162400 Prunus persica HOM05D000363 ORTHO05D000236 5.9e-07 59.7 99 36.4
Cpa.g.sc6.184 Carica papaya HOM05D000363 ORTHO05D000236 1.0e-06 58.9 76 40.8
FAN23G1427 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.0e-06 58.9 76 42.1
FvH4_1g12460 Fragaria vesca HOM05D000363 ORTHO05D000236 1.3e-06 58.5 76 40.8
FAN19G0327 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.3e-06 58.5 76 40.8
Medtr5g071570 Medicago truncatula HOM05D000009 ORTHO05D000008 1.3e-06 58.5 72 47.2
PSO170G0253 Papaver somniferum HOM05D000363 ORTHO05D000236 1.3e-06 58.5 334 22.5
Sc16g0008760 Simmondsia chinensis HOM05D000363 ORTHO05D000236 1.7e-06 58.2 76 35.5
PSO170G6498 Papaver somniferum HOM05D000363 ORTHO05D000236 3.8e-06 57.0 153 28.8
RcHm_v2.0_Chr2g0100321 Rosa chinensis HOM05D000363 ORTHO05D000236 3.8e-06 57.0 76 39.5
Gohir.D11G187500 Gossypium hirsutum HOM05D000363 ORTHO05D000236 5.0e-06 56.6 76 42.1
Gorai.007G199400 Gossypium raimondii HOM05D000363 ORTHO05D000236 5.0e-06 56.6 76 42.1
Gorai.007G199500 Gossypium raimondii HOM05D000363 ORTHO05D000236 5.0e-06 56.6 76 39.5
PGR083G1406 Punica granatum HOM05D000363 ORTHO05D000236 5.0e-06 56.6 144 29.2
MELO3C017947.2 Cucumis melo HOM05D000363 ORTHO05D000236 6.5e-06 56.2 76 39.5
Gohir.A11G181100 Gossypium hirsutum HOM05D000363 ORTHO05D000236 6.5e-06 56.2 76 39.5
Medtr5g072260 Medicago truncatula HOM05D036032 ORTHO05D260814 6.5e-06 56.2 85 42.4
Prupe.7G162300 Prunus persica HOM05D000363 ORTHO05D000236 6.5e-06 56.2 75 36.0
QL11p045365 Quercus lobata HOM05D000363 ORTHO05D000236 6.5e-06 56.2 76 42.1
PSO407G0386 Papaver somniferum HOM05D000363 ORTHO05D000236 8.5e-06 55.8 78 37.2
SMO201G0237 Selaginella moellendorffii HOM05D000363 ORTHO05D000236 8.5e-06 55.8 76 36.8
GSVIVG01018184001 Vitis vinifera HOM05D000363 ORTHO05D000236 8.5e-06 55.8 76 40.8


User provided reference genes

Program Settings