Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G181900 Manihot esculenta HOM05D003467 ORTHO05D004220 2.2e-114 415.6 206 100.0
Manes.02G141800 Manihot esculenta HOM05D003467 ORTHO05D004220 1.0e-71 273.9 202 71.3
CANSAT16G0031 Cannabis sativa HOM05D003467 ORTHO05D004220 8.8e-55 217.6 204 58.8
Lj2C1229G12 Lonicera japonica HOM05D003467 ORTHO05D004220 1.5e-54 216.9 202 57.4
Nn1g10002 Nelumbo nucifera HOM05D003467 ORTHO05D004220 4.4e-54 215.3 202 58.4
SabraMtG0006300 Salix brachista HOM05D003467 ORTHO05D004220 9.7e-54 214.2 203 58.6
Dinv06674 Davidia involucrata HOM05D003467 ORTHO05D004220 1.1e-52 210.7 202 56.9
Rhsim07G0055600 Rhododendron simsii HOM05D003467 ORTHO05D004220 1.2e-51 207.2 204 57.8
Actinidia34926 Actinidia chinensis HOM05D003467 ORTHO05D004220 4.5e-51 205.3 202 56.4
ClCG11G007180 Citrullus lanatus HOM05D003467 ORTHO05D004220 4.5e-51 205.3 202 56.4
CARHR282930 Cardamine hirsuta HOM05D003467 ORTHO05D004220 5.9e-51 204.9 205 55.1
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 5.0e-50 201.8 204 56.9
Solyc00g500228.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 5.5e-49 198.4 205 55.6
SGA_v2.0_scaffold255G45505 Striga asiatica HOM05D003467 ORTHO05D004220 5.5e-49 198.4 199 56.3
BcaC08g43711 Brassica carinata HOM05D003467 ORTHO05D004220 2.1e-48 196.4 205 53.7
BNapus_Darmor_BZH_scaffold_234p00200 Brassica napus HOM05D003467 ORTHO05D004220 2.1e-48 196.4 205 53.7
BolSC28t60347H Brassica oleracea HOM05D003467 ORTHO05D004220 2.1e-48 196.4 205 53.7
BraSC48t46273Z Brassica rapa HOM05D003467 ORTHO05D004220 2.1e-48 196.4 205 53.7
Sp3g25530 Schrenkiella parvula HOM05D003467 ORTHO05D004220 2.1e-48 196.4 205 53.7
AL3G44370 Arabidopsis lyrata HOM05D003467 ORTHO05D004220 3.6e-48 195.7 205 53.7
ATMG00560 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 3.6e-48 195.7 205 53.7
MBI16_g09480_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 1.0e-47 194.1 202 54.5
AT2G07715 Arabidopsis thaliana HOM05D003467 ORTHO05D004220 5.2e-47 191.8 205 53.2
CsaV3_UNG208190 Cucumis sativus L. HOM05D003467 ORTHO05D004220 3.3e-46 189.1 205 54.6
Thhalv10013769m.g Eutrema salsugineum HOM05D003467 ORTHO05D004220 5.7e-46 188.3 205 51.7
BolC4t23495H Brassica oleracea HOM05D003467 ORTHO05D004220 6.3e-45 184.9 201 52.7
SHI52008 Sapria himalayana HOM05D003467 ORTHO05D004220 6.3e-45 184.9 203 53.2
Solyc00g500103.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 6.3e-45 184.9 205 53.7
SHI50250 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-44 184.1 203 52.7
SHI53305 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-44 184.1 200 52.5
SHI36699 Sapria himalayana HOM05D003467 ORTHO05D004220 1.4e-44 183.7 203 53.2
Aa31csc239G20 Aethionema arabicum HOM05D003467 ORTHO05D004220 3.5e-43 179.1 205 52.2
SHI37961 Sapria himalayana HOM05D003467 ORTHO05D004220 7.7e-43 177.9 200 52.5
SHI40343 Sapria himalayana HOM05D003467 ORTHO05D004220 7.7e-43 177.9 200 52.5
SHI42055 Sapria himalayana HOM05D003467 ORTHO05D004220 7.7e-43 177.9 200 52.5
Aqoxy4G00639 Aquilegia oxysepala HOM05D003467 ORTHO05D004220 1.9e-41 173.3 205 50.7
Sed0025530 Sechium edule HOM05D003467 ORTHO05D004220 4.2e-41 172.2 202 51.0
Nitab4.5_0009709g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.2e-40 170.6 196 51.0
SHI38192 Sapria himalayana HOM05D003467 ORTHO05D004220 1.2e-40 170.6 200 49.5
SHI51351 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-40 170.2 200 49.5
Peaxi162Scf00197g00034 Petunia axillaris HOM05D003467 ORTHO05D004220 1.0e-39 167.5 179 54.7
unitig_87.g27965 Utricularia gibba HOM05D003467 ORTHO05D004220 4.0e-39 165.6 194 52.6
Sopen05g012590 Solanum pennellii HOM05D003467 ORTHO05D004220 5.2e-39 165.2 174 55.2
Peaxi162Scf00507g00009 Petunia axillaris HOM05D003467 ORTHO05D004220 3.4e-38 162.5 201 48.3
Nitab4.5_0004471g0080 Nicotiana tabacum HOM05D003467 ORTHO05D004220 2.2e-37 159.8 172 54.7
SHI52601 Sapria himalayana HOM05D003467 ORTHO05D004220 3.7e-37 159.1 192 49.0
SHI46915 Sapria himalayana HOM05D003467 ORTHO05D004220 4.8e-37 158.7 200 46.0
Ciclev10005397m.g Citrus clementina HOM05D003467 ORTHO05D004220 6.3e-37 158.3 215 44.2
SHI37866 Sapria himalayana HOM05D003467 ORTHO05D004220 1.4e-36 157.1 200 49.5
Nitab4.5_0001796g0090 Nicotiana tabacum HOM05D003467 ORTHO05D004220 3.1e-36 156.0 181 50.3
SHI53641 Sapria himalayana HOM05D003467 ORTHO05D004220 4.1e-36 155.6 202 47.5
Sc16g0002730 Simmondsia chinensis HOM05D003467 ORTHO05D004220 4.1e-36 155.6 197 47.2
HanXRQChr14g0459301 Helianthus annuus HOM05D003467 ORTHO05D004220 2.0e-35 153.3 202 42.6
SHI37556 Sapria himalayana HOM05D003467 ORTHO05D004220 4.5e-35 152.1 200 47.0
SHI37886 Sapria himalayana HOM05D003467 ORTHO05D004220 5.9e-35 151.8 200 45.5
SHI52904 Sapria himalayana HOM05D003467 ORTHO05D004220 1.0e-34 151.0 200 45.0
CAN.G502.14 Capsicum annuum HOM05D003467 ORTHO05D004220 6.5e-34 148.3 204 46.6
Nitab4.5_0001152g0330 Nicotiana tabacum HOM05D003467 ORTHO05D004220 2.5e-33 146.4 195 45.6
SalBow7G2519 Salvia bowleyana HOM05D003467 ORTHO05D004220 9.5e-33 144.4 202 45.0
SalBow7G4829 Salvia bowleyana HOM05D003467 ORTHO05D004220 9.5e-33 144.4 202 45.0
SalBow1G2953 Salvia bowleyana HOM05D003467 ORTHO05D004220 1.6e-32 143.7 202 45.0
CAN.G134.20 Capsicum annuum HOM05D003467 ORTHO05D004220 2.8e-32 142.9 182 47.8
Lsat_1_v5_gn_6_32340 Lactuca sativa HOM05D003467 ORTHO05D004220 3.6e-32 142.5 201 41.8
SHI37209 Sapria himalayana HOM05D003467 ORTHO05D004220 5.2e-31 138.7 200 42.0
EL10Ac6g15561 Beta vulgaris HOM05D003467 ORTHO05D004220 8.9e-31 137.9 195 42.1
SHI38317 Sapria himalayana HOM05D003467 ORTHO05D004220 1.2e-30 137.5 201 45.8
SHI52927 Sapria himalayana HOM05D003467 ORTHO05D004220 1.2e-30 137.5 200 44.0
SalBow1G6425 Salvia bowleyana HOM05D003467 ORTHO05D004220 2.0e-30 136.7 201 43.3
SHI52974 Sapria himalayana HOM05D003467 ORTHO05D004220 2.0e-30 136.7 176 49.4
BcaC05g26882 Brassica carinata HOM05D003467 ORTHO05D004220 7.5e-30 134.8 202 43.1
AUR62004052 Chenopodium quinoa HOM05D003467 ORTHO05D004220 7.5e-30 134.8 196 40.8
AUR62007567 Chenopodium quinoa HOM05D003467 ORTHO05D004220 4.9e-29 132.1 196 40.8
SHI48358 Sapria himalayana HOM05D003467 ORTHO05D004220 4.9e-29 132.1 164 48.2
Nitab4.5_0009703g0010 Nicotiana tabacum HOM05D003467 ORTHO05D004220 8.3e-29 131.3 156 52.6
Migut.N03022 Erythranthe guttata HOM05D003467 ORTHO05D004220 1.8e-28 130.2 204 42.6
CDE02G2877 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 2.4e-28 129.8 349 31.8
COL.COLO4_18957 Corchorus olitorius HOM05D003467 ORTHO05D004220 9.2e-28 127.9 198 43.9
Lsat_1_v5_gn_1_109980 Lactuca sativa HOM05D003467 ORTHO05D004220 9.2e-28 127.9 199 38.2
SHI51177 Sapria himalayana HOM05D003467 ORTHO05D004220 7.8e-27 124.8 206 39.3
Lsat_1_v5_gn_2_118881 Lactuca sativa HOM05D003467 ORTHO05D004220 5.0e-26 122.1 200 36.5
SHI38047 Sapria himalayana HOM05D003467 ORTHO05D004220 8.6e-26 121.3 169 47.3
Hund13975 Selenicereus undatus HOM05D003467 ORTHO05D004220 2.5e-25 119.8 196 39.8
SHI37879 Sapria himalayana HOM05D003467 ORTHO05D004220 7.3e-25 118.2 167 46.7
Oeu039080.1 Olea europaea HOM05D003467 ORTHO05D004220 9.5e-25 117.9 117 56.4
Atru.chr10.2291 Acer truncatum HOM05D003467 ORTHO05D004220 2.1e-24 116.7 190 44.2
MBI05_g05352_MAGBIO Magnolia biondii HOM05D003467 ORTHO05D004220 2.1e-24 116.7 122 54.1
SHI36967 Sapria himalayana HOM05D003467 ORTHO05D004220 2.1e-24 116.7 120 54.2
CAN.G1.25 Capsicum annuum HOM05D003467 ORTHO05D004220 5.2e-23 112.1 95 56.8
C09p21580 Brassica napus HOM05D003467 ORTHO05D004220 8.9e-23 111.3 110 53.6
Zm00001eb180350 Zea mays HOM05D000540 ORTHO05D000681 8.9e-23 111.3 192 37.5
SHI47986 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-22 110.5 159 46.5
SHI38985 Sapria himalayana HOM05D003467 ORTHO05D004220 2.0e-22 110.2 147 46.3
PGSC0003DMG401008792 Solanum tuberosum HOM05D003467 ORTHO05D004220 2.0e-22 110.2 181 43.6
Ah.04g149890 Amaranthus hybridus HOM05D003467 ORTHO05D004220 3.4e-22 109.4 195 36.9
Sopen06g007650 Solanum pennellii HOM05D003467 ORTHO05D004220 5.8e-22 108.6 123 49.6
BolC9t55063H Brassica oleracea HOM05D003467 ORTHO05D004220 2.9e-21 106.3 110 52.7
BraSC77t46654Z Brassica rapa HOM05D003467 ORTHO05D004220 2.4e-20 103.2 92 57.6
CARHR288290 Cardamine hirsuta HOM05D003467 ORTHO05D004220 9.2e-20 101.3 136 48.5
CDE02G4335 Ceratophyllum demersum HOM05D003467 ORTHO05D004220 1.2e-19 100.9 198 36.9
SHI36996 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-19 100.5 120 50.0
SHI52074 Sapria himalayana HOM05D003467 ORTHO05D004220 1.6e-19 100.5 124 47.6
ATR0660G011 Amborella trichopoda HOM05D003467 ORTHO05D004220 1.0e-18 97.8 98 55.1
Sed0002506 Sechium edule HOM05D003467 ORTHO05D004220 1.7e-18 97.1 188 39.4
SHI44577 Sapria himalayana HOM05D003467 ORTHO05D004220 3.0e-18 96.3 90 57.8
SHI43968 Sapria himalayana HOM05D003467 ORTHO05D004220 3.9e-18 95.9 104 52.9
Phvul.008G005400 Phaseolus vulgaris HOM05D003467 ORTHO05D004220 1.1e-17 94.4 201 37.3
ATR0661G353 Amborella trichopoda HOM05D003467 ORTHO05D004220 1.5e-17 94.0 90 56.7
BcaC05g26874 Brassica carinata HOM05D003467 ORTHO05D004220 1.5e-17 94.0 203 35.5
SHI36997 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-17 94.0 73 61.6
Ca_04056_v3 Cicer arietinum L. HOM05D003467 ORTHO05D004220 2.5e-17 93.2 193 32.1
ECA238G4840 Erigeron canadensis HOM05D000460 ORTHO05D000333 2.5e-17 93.2 198 33.8
Glyma.08G365200 Glycine max HOM05D003467 ORTHO05D004220 4.3e-17 92.4 193 33.7
Glyma.07G149151 Glycine max HOM05D003467 ORTHO05D004220 1.2e-16 90.9 193 33.7
Lsat_1_v5_gn_4_83901 Lactuca sativa HOM05D003467 ORTHO05D004220 1.6e-16 90.5 179 34.6
SHI43969 Sapria himalayana HOM05D003467 ORTHO05D004220 2.1e-16 90.1 90 54.4
Lalb_Chr04g0257431 Lupinus albus HOM05D003467 ORTHO05D004220 2.8e-16 89.7 198 33.3
Nitab4.5_0002635g0050 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.1e-15 87.8 101 50.5
SHI38898 Sapria himalayana HOM05D003467 ORTHO05D004220 1.1e-15 87.8 200 35.0
VMungo1383G2739 Vigna mungo HOM05D003467 ORTHO05D004220 1.8e-15 87.0 199 35.2
Nitab4.5_0006602g0040 Nicotiana tabacum HOM05D003467 ORTHO05D004220 4.0e-15 85.9 78 55.1
Lsat_1_v5_gn_5_114100 Lactuca sativa HOM05D003467 ORTHO05D004220 1.5e-14 84.0 87 44.8
SalBow1G5399 Salvia bowleyana HOM05D003467 ORTHO05D004220 1.5e-14 84.0 107 47.7
SHI54334 Sapria himalayana HOM05D003467 ORTHO05D004220 2.0e-14 83.6 110 47.3
SHI34611 Sapria himalayana HOM05D003467 ORTHO05D004220 2.6e-14 83.2 131 44.3
SHI42502 Sapria himalayana HOM05D003467 ORTHO05D004220 2.6e-14 83.2 71 56.3
Lsat_1_v5_gn_7_88480 Lactuca sativa HOM05D003467 ORTHO05D004220 7.5e-14 81.6 184 33.2
Medtr7g007070 Medicago truncatula HOM05D003467 ORTHO05D004220 1.7e-13 80.5 193 31.6
Lsat_1_v5_gn_8_11861 Lactuca sativa HOM05D003467 ORTHO05D004220 2.9e-13 79.7 154 36.4
SHI38786 Sapria himalayana HOM05D003467 ORTHO05D004220 3.7e-13 79.3 143 42.7
SGA_v2.0_scaffold507G52535 Striga asiatica HOM05D003467 ORTHO05D004220 4.9e-13 79.0 55 65.5
Lj1g0022622 Lotus japonicus HOM05D003467 ORTHO05D004220 8.3e-13 78.2 185 32.4
Nitab4.5_0012067g0060 Nicotiana tabacum HOM05D003467 ORTHO05D004220 3.2e-12 76.3 78 51.3
Lsat_1_v5_gn_5_163900 Lactuca sativa HOM05D003467 ORTHO05D004220 2.3e-10 70.1 124 39.5
Lsat_1_v5_gn_3_81380 Lactuca sativa HOM05D003467 ORTHO05D004220 3.0e-10 69.7 101 41.6
SEGI_40930 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.2e-08 64.3 170 31.2
Psat3g204920 Pisum sativum HOM05D003467 ORTHO05D004220 1.6e-08 63.9 155 32.3
SGA_v2.0_scaffold361G49910 Striga asiatica HOM05D003467 ORTHO05D004220 1.6e-08 63.9 42 64.3
CAN.G1572.11 Capsicum annuum HOM05D003467 ORTHO05D004220 6.2e-08 62.0 54 57.4
CAN.G2141.7 Capsicum annuum HOM05D003467 ORTHO05D004220 6.2e-08 62.0 54 57.4
CAN.G76.4 Capsicum annuum HOM05D003467 ORTHO05D004220 6.2e-08 62.0 54 57.4
CAN.G267.15 Capsicum annuum HOM05D003467 ORTHO05D004220 8.1e-08 61.6 54 55.6
Lsat_1_v5_gn_1_70701 Lactuca sativa HOM05D003467 ORTHO05D004220 1.1e-07 61.2 60 50.0
Nitab4.5_0004300g0280 Nicotiana tabacum HOM05D003467 ORTHO05D004220 1.1e-07 61.2 49 61.2
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.4e-07 60.8 114 36.8
TPR.G9704 Trifolium pratense HOM05D003467 ORTHO05D004220 1.8e-07 60.5 84 38.1
MELO3C032707.2 Cucumis melo HOM05D000263 ORTHO05D000213 1.2e-06 57.8 49 57.1
Lsat_1_v5_gn_9_26841 Lactuca sativa HOM05D003467 ORTHO05D004220 1.5e-06 57.4 78 37.2
SHI38986 Sapria himalayana HOM05D003467 ORTHO05D004220 1.5e-06 57.4 46 58.7
Lsat_1_v5_gn_3_78181 Lactuca sativa HOM05D003467 ORTHO05D004220 4.4e-06 55.8 46 52.2
SHI44578 Sapria himalayana HOM05D003467 ORTHO05D004220 5.8e-06 55.5 39 61.5
Solyc02g092280.1 Solanum lycopersicum HOM05D003467 ORTHO05D004220 7.5e-06 55.1 80 47.5
Lsat_1_v5_gn_3_107140 Lactuca sativa HOM05D003467 ORTHO05D004220 9.9e-06 54.7 92 34.8
SHI42501 Sapria himalayana HOM05D003467 ORTHO05D004220 9.9e-06 54.7 93 40.9


User provided reference genes

Program Settings