Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 2.3e-180 635.6 345 100.0
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 4.2e-150 535.0 345 83.2
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 9.3e-150 533.9 345 84.1
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 2.3e-148 529.3 346 83.5
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.9e-147 526.2 345 83.2
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.3e-147 525.4 345 82.9
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 4.3e-147 525.0 342 84.2
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.6e-146 521.9 345 81.4
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.4e-145 520.0 342 83.6
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 2.4e-145 519.2 341 81.5
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 6.9e-145 517.7 345 80.3
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.2e-144 516.9 371 78.2
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 2.0e-144 516.2 345 80.6
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.8e-144 514.6 345 80.3
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 2.9e-143 512.3 345 80.9
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 4.9e-143 511.5 345 80.3
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 6.4e-143 511.1 345 79.1
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 8.4e-143 510.8 345 80.6
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 1.4e-142 510.0 344 80.2
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.4e-142 509.2 345 80.3
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.2e-142 508.8 345 80.3
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 3.5e-141 505.4 335 80.9
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.5e-141 505.4 345 79.7
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 4.6e-141 505.0 337 78.9
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 7.9e-141 504.2 345 78.8
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.0e-140 503.8 345 78.0
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.8e-140 503.1 335 80.6
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.8e-140 503.1 345 77.7
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.3e-140 502.7 345 79.7
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 3.0e-140 502.3 345 78.3
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 3.0e-140 502.3 345 79.7
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 5.1e-140 501.5 345 77.4
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.3e-139 498.8 340 79.4
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.3e-139 498.4 345 77.7
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 7.4e-139 497.7 345 77.7
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-138 496.9 347 79.0
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.1e-138 496.1 345 77.4
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 8.1e-138 494.2 335 80.3
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.8e-137 493.0 345 77.1
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.8e-137 493.0 345 76.5
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 3.4e-136 488.8 345 78.8
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.9e-135 485.0 345 75.9
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.9e-134 483.0 345 77.1
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.2e-134 481.9 345 75.4
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 7.1e-134 481.1 345 75.4
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.6e-133 479.9 345 75.1
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.6e-133 479.9 342 76.9
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 2.7e-133 479.2 345 75.1
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.9e-132 475.3 315 80.0
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 8.7e-132 474.2 345 74.2
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.5e-131 473.4 345 75.7
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 2.1e-130 469.5 345 74.2
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.1e-130 469.5 340 74.1
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.7e-130 468.8 319 80.3
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.1e-129 467.2 345 73.3
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 9.0e-129 464.2 345 74.8
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.5e-128 463.4 345 74.5
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.5e-128 461.8 345 74.2
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 7.6e-128 461.1 345 72.8
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.3e-127 460.3 345 73.6
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 1.6e-125 453.4 340 72.9
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 5.7e-123 444.9 341 71.0
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.1e-121 440.7 345 71.6
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 5.3e-121 438.3 331 72.8
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 6.9e-121 438.0 341 70.4
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 9.1e-121 437.6 345 71.3
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 9.1e-121 437.6 346 69.7
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 2.0e-120 436.4 345 69.0
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.3e-119 433.7 345 69.9
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.5e-118 429.5 345 68.7
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.2e-117 427.2 345 69.9
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.2e-117 427.2 289 77.9
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.6e-117 426.8 341 68.3
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 2.1e-117 426.4 319 74.0
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 5.1e-116 421.8 345 68.4
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.5e-115 420.2 345 69.9
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 3.3e-115 419.1 328 70.7
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 4.4e-115 418.7 345 68.4
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.4e-113 413.7 339 67.3
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.4e-113 413.7 394 62.2
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.4e-113 412.9 345 68.4
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 5.3e-113 411.8 346 68.8
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.6e-112 409.5 345 68.1
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 3.4e-112 409.1 345 66.1
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 2.9e-111 406.0 337 67.4
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.1e-110 404.1 345 66.4
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 3.2e-110 402.5 347 64.6
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 8.8e-108 394.4 287 74.2
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.0e-107 393.3 289 72.3
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 2.0e-107 393.3 345 65.2
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.7e-106 390.2 345 63.2
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 9.1e-105 384.4 345 63.5
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 5.9e-104 381.7 373 61.4
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.3e-103 380.6 345 64.1
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.3e-103 380.6 345 64.1
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 2.2e-103 379.8 261 77.0
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.5e-102 376.3 345 62.3
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 4.2e-102 375.6 319 68.7
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.2e-101 374.0 345 63.5
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.1e-101 371.7 338 63.3
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 6.7e-100 368.2 345 63.2
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.0e-99 366.7 348 60.3
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 4.4e-99 365.5 343 62.4
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 4.4e-99 365.5 333 61.0
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 4.4e-99 365.5 345 61.4
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.3e-98 364.0 350 60.6
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.8e-98 362.8 326 62.0
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.1e-97 360.9 349 60.5
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.8e-97 360.1 345 60.0
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 2.4e-97 359.8 366 58.7
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 9.1e-97 357.8 348 59.8
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.6e-91 339.7 329 60.2
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 5.7e-91 338.6 346 58.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 5.7e-91 338.6 346 58.1
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 8.3e-90 334.7 346 59.0
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.1e-89 334.3 339 60.2
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 3.1e-89 332.8 348 56.9
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.1e-89 332.8 346 58.4
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 7.0e-89 331.6 295 64.4
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.6e-88 330.5 338 58.9
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 2.7e-88 329.7 348 56.3
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.5e-87 325.1 348 56.9
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.2e-85 320.9 346 56.9
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.4e-84 317.4 346 55.8
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 2.3e-84 316.6 346 55.5
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 8.8e-84 314.7 345 55.1
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 4.4e-83 312.4 343 57.7
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 5.7e-83 312.0 317 60.9
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 3.7e-82 309.3 334 51.5
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.1e-81 306.2 303 61.1
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.7e-80 303.1 346 53.8
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.0e-79 301.2 343 50.7
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.7e-79 300.4 343 56.0
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.1e-78 297.7 341 53.1
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.2e-77 294.3 341 53.1
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.0e-75 287.0 345 49.6
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 3.4e-75 286.2 285 61.8
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 1.7e-74 283.9 341 53.1
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 7.0e-73 278.5 303 58.1
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 2.0e-72 276.9 269 62.5
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 3.5e-72 276.2 285 60.4
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 4.6e-72 275.8 265 63.4
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 5.9e-72 275.4 296 58.4
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.7e-71 273.9 262 61.8
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 3.0e-71 273.1 345 49.6
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.5e-70 270.8 341 49.6
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.3e-63 247.7 293 50.9
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.0e-63 246.5 289 51.6
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 5.0e-63 245.7 342 42.4
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.1e-62 244.6 338 43.8
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.6e-59 233.4 343 46.1
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 7.5e-59 231.9 356 46.3
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 6.4e-58 228.8 354 46.0
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 2.4e-57 226.9 138 91.3
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 2.3e-55 220.3 343 39.1
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.1e-54 218.0 290 46.6
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.8e-52 210.7 239 56.1
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 9.6e-46 188.3 185 54.6
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.2e-45 188.0 142 74.6
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 6.2e-45 185.7 152 69.7
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.3e-42 177.9 158 67.1
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 1.7e-42 177.6 176 58.5
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.1e-39 166.0 297 43.1
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 3.0e-31 140.2 322 37.0
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.0e-31 140.2 321 37.4
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 5.8e-27 125.9 292 37.0
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 4.9e-26 122.9 172 48.8
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 3.2e-25 120.2 281 35.9
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 3.2e-25 120.2 281 35.9
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 1.5e-19 101.3 127 55.9
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 1.2e-16 91.7 55 90.9
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.8e-15 87.8 111 54.1
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 2.3e-15 87.4 50 92.0
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 4.8e-13 79.7 292 30.5
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 4.2e-09 66.6 131 44.3
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 5.5e-09 66.2 125 43.2
C09p13680 Brassica napus HOM05D001533 ORTHO05D019802 3.3e-06 57.0 125 39.2


User provided reference genes

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