Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 4.3e-138 495.0 309 100.0
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 6.9e-88 328.2 305 63.6
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 1.4e-48 197.6 332 44.9
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 4.9e-41 172.6 307 48.9
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 5.4e-40 169.1 334 38.9
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 1.2e-39 167.9 334 39.8
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 3.9e-38 162.9 319 45.5
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 5.8e-34 149.1 321 38.3
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 7.5e-34 148.7 334 39.2
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 1.1e-32 144.8 337 36.8
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 2.4e-32 143.7 338 37.6
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 1.2e-31 141.4 324 38.0
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 2.0e-31 140.6 342 37.1
Sabra02G0048700 Salix brachista HOM05D006785 ORTHO05D006259 6.0e-31 139.0 307 44.3
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 2.3e-30 137.1 326 41.4
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 3.3e-29 133.3 355 37.2
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 3.3e-29 133.3 355 37.2
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 3.6e-28 129.8 325 37.8
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 4.7e-28 129.4 247 42.5
VMungo0647G1995 Vigna mungo HOM05D006785 ORTHO05D006259 4.7e-28 129.4 302 42.4
Dinv07090 Davidia involucrata HOM05D006785 ORTHO05D006259 8.1e-28 128.6 376 33.5
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 1.8e-27 127.5 307 41.7
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 2.3e-27 127.1 361 34.6
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 3.1e-27 126.7 325 37.2
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 3.1e-27 126.7 190 44.2
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 4.0e-27 126.3 327 37.6
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 6.8e-27 125.6 325 37.2
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 6.8e-27 125.6 334 35.0
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 1.5e-26 124.4 334 35.3
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 1.5e-26 124.4 307 39.4
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 3.4e-26 123.2 202 48.5
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 4.4e-26 122.9 210 42.4
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 5.8e-26 122.5 300 35.3
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 4.9e-25 119.4 325 36.0
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 1.1e-24 118.2 299 35.8
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 1.1e-24 118.2 249 40.6
Glyma.14G027900 Glycine max HOM05D006785 ORTHO05D006259 4.1e-24 116.3 311 38.6
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 2.3e-22 110.5 315 34.0
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 5.1e-22 109.4 314 31.2
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 1.5e-21 107.8 207 38.6
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 2.5e-21 107.1 332 31.9
Nn3g20927 Nelumbo nucifera HOM05D006785 ORTHO05D006259 3.3e-21 106.7 357 30.8
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 5.6e-21 105.9 314 34.4
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 5.6e-21 105.9 314 33.8
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 1.6e-20 104.4 321 33.0
Rhsim06G0116700 Rhododendron simsii HOM05D006785 ORTHO05D006259 1.6e-20 104.4 323 40.2
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 2.1e-20 104.0 299 32.8
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 4.7e-20 102.8 313 34.2
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 4.7e-20 102.8 173 46.8
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 6.2e-20 102.4 319 32.0
Duzib264G0099 Durio zibethinus HOM05D006785 ORTHO05D006259 1.4e-19 101.3 317 42.0
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 1.4e-19 101.3 173 46.2
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 3.1e-19 100.1 173 45.7
Potri.002G060200 Populus trichocarpa HOM05D006785 ORTHO05D006259 3.1e-19 100.1 307 39.7
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 2.0e-18 97.4 238 35.7
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 2.0e-18 97.4 309 31.1
TAR627G0640 Trochodendron aralioides HOM05D006785 ORTHO05D006259 3.4e-18 96.7 170 41.8
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 5.8e-18 95.9 235 34.9
LjContig00310g0014416 Lotus japonicus HOM05D006785 ORTHO05D006259 7.6e-18 95.5 316 37.0
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 9.9e-18 95.1 331 34.1
Lj1P620T12 Lonicera japonica HOM05D006785 ORTHO05D006259 2.9e-17 93.6 273 39.6
Actinidia11204 Actinidia chinensis HOM05D006785 ORTHO05D006259 4.9e-17 92.8 198 40.9
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 4.9e-17 92.8 236 35.2
TAR629G3165 Trochodendron aralioides HOM05D006785 ORTHO05D006259 9.2e-16 88.6 144 45.1
MBI10_g42732_MAGBIO Magnolia biondii HOM05D006785 ORTHO05D006259 1.6e-15 87.8 142 44.4
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 2.7e-15 87.0 327 30.9
Aa31LG1G7630 Aethionema arabicum HOM05D006785 ORTHO05D006259 6.0e-15 85.9 151 40.4
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 6.0e-15 85.9 304 30.6
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 7.8e-15 85.5 329 32.8
Psat2g015800 Pisum sativum HOM05D006785 ORTHO05D006259 1.3e-14 84.7 311 32.5
DCAR_013314 Daucus carota HOM05D006785 ORTHO05D006259 1.7e-14 84.3 215 34.0
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 2.3e-14 84.0 326 29.4
TPR.G12660 Trifolium pratense HOM05D006785 ORTHO05D006259 3.0e-14 83.6 303 29.4
Lalb_Chr05g0211951 Lupinus albus HOM05D006785 ORTHO05D006259 6.6e-14 82.4 205 31.7
Gohir.A11G224802 Gossypium hirsutum HOM05D006785 ORTHO05D006259 7.3e-13 79.0 308 29.2
arahy.Tifrunner.gnm1.ann1.W4MS3F Arachis hypogaea HOM05D006785 ORTHO05D006259 9.6e-13 78.6 306 29.7
C05p04790 Brassica napus HOM05D006785 ORTHO05D006259 1.2e-12 78.2 178 36.5
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 1.2e-12 78.2 324 29.0
arahy.Tifrunner.gnm1.ann1.SE4LXZ Arachis hypogaea HOM05D006785 ORTHO05D006259 1.6e-12 77.8 236 32.2
Duzib147G0591 Durio zibethinus HOM05D006785 ORTHO05D006259 2.1e-12 77.4 340 32.6
Sp1g05290 Schrenkiella parvula HOM05D006785 ORTHO05D006259 2.1e-12 77.4 123 45.5
HanXRQChr08g0227971 Helianthus annuus HOM05D009485 ORTHO05D006259 4.7e-12 76.3 173 34.7
Aa31LG5G5980 Aethionema arabicum HOM05D006785 ORTHO05D006259 1.8e-11 74.3 295 28.8
BcaB02g06783 Brassica carinata HOM05D006785 ORTHO05D006259 3.1e-11 73.6 233 34.8
Aa31LG10G13400 Aethionema arabicum HOM05D006785 ORTHO05D006259 4.0e-11 73.2 322 32.3
TAR622G1344 Trochodendron aralioides HOM05D006785 ORTHO05D006259 4.0e-11 73.2 166 36.1
Cc05_g09420 Coffea canephora HOM05D009485 ORTHO05D006259 5.2e-11 72.8 322 35.4
AL1G16560 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 6.9e-11 72.4 335 29.0
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 4.4e-10 69.7 226 31.0
Sopen10g003690 Solanum pennellii HOM05D009485 ORTHO05D006259 7.6e-10 68.9 321 31.8
PSO675G6378 Papaver somniferum HOM05D006785 ORTHO05D006259 1.7e-09 67.8 135 39.3
PSO541G2000 Papaver somniferum HOM05D006785 ORTHO05D006259 2.2e-09 67.4 138 39.9
Ciclev10032336m.g Citrus clementina HOM05D006785 ORTHO05D006259 2.9e-09 67.0 324 30.2
CARHR169250 Cardamine hirsuta HOM05D006785 ORTHO05D006259 3.8e-09 66.6 151 33.1
ECA233G1175 Erigeron canadensis HOM05D009485 ORTHO05D006259 3.8e-09 66.6 315 34.6
ATR0568G074 Amborella trichopoda HOM05D006785 ORTHO05D006259 8.4e-09 65.5 329 28.0
Hma1.2p1_0960F.1_g241635 Hydrangea macrophylla HOM05D006785 ORTHO05D006259 1.4e-08 64.7 358 34.1
Nitab4.5_0002027g0170 Nicotiana tabacum HOM05D009485 ORTHO05D006259 3.2e-08 63.5 309 33.0
MSTRG.6747 Avicennia marina HOM05D009485 ORTHO05D006259 5.4e-08 62.8 173 38.7
Migut.M00503 Erythranthe guttata HOM05D009485 ORTHO05D006259 5.4e-08 62.8 198 35.4
Oeu036701.1 Olea europaea HOM05D006851 ORTHO05D008844 1.2e-07 61.6 332 31.0
Phvul.006G033700 Phaseolus vulgaris HOM05D067041 ORTHO05D020454 1.6e-07 61.2 191 30.9
BcaB02g07495 Brassica carinata HOM05D006785 ORTHO05D006259 2.1e-07 60.8 317 28.4
Nitab4.5_0001402g0020 Nicotiana tabacum HOM05D009485 ORTHO05D006259 2.1e-07 60.8 192 33.3
Peaxi162Scf00111g00008 Petunia axillaris HOM05D009485 ORTHO05D006259 4.6e-07 59.7 288 35.1
TPR.G15576 Trifolium pratense HOM05D021759 ORTHO05D020454 4.6e-07 59.7 202 27.2
Lsat_1_v5_gn_6_18081 Lactuca sativa HOM05D009485 ORTHO05D006259 6.0e-07 59.3 352 33.0
PSO104G0025 Papaver somniferum HOM05D006785 ORTHO05D006259 6.0e-07 59.3 98 39.8
BraA07t30085Z Brassica rapa HOM05D006785 ORTHO05D023842 1.3e-06 58.2 197 35.5
Peaxi162Scf00035g00291 Petunia axillaris HOM05D009485 ORTHO05D006259 3.0e-06 57.0 330 28.8
PGSC0003DMG400021282 Solanum tuberosum HOM05D009485 ORTHO05D006259 6.6e-06 55.8 205 33.2
Aqoxy4G00148 Aquilegia oxysepala HOM05D006785 ORTHO05D006259 8.7e-06 55.5 276 29.3


User provided reference genes

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