Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 0.0e+00 1831.2 930 100.0
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 0.0e+00 1152.9 932 66.5
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 0.0e+00 1151.3 932 65.3
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 0.0e+00 1149.8 932 65.8
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 0.0e+00 1097.8 993 59.7
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 0.0e+00 1079.3 939 62.7
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 6.4e-312 1074.3 934 62.7
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.4e-309 1066.2 942 61.7
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 5.5e-306 1054.3 940 62.0
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 9.4e-306 1053.5 940 61.9
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 1.5e-303 1046.2 952 60.3
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 9.7e-303 1043.5 936 59.6
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 9.1e-301 1036.9 940 61.2
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.3e-291 1006.5 942 59.0
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 1.2e-287 993.4 939 58.9
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 3.7e-286 988.4 938 57.9
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.7e-286 988.4 957 58.3
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 3.1e-285 985.3 911 60.5
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.2e-284 983.4 947 58.3
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.9e-284 981.1 944 57.5
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.1e-282 976.9 944 58.5
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.9e-282 976.1 944 58.5
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 2.5e-282 975.7 943 55.6
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 3.3e-282 975.3 937 56.0
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 4.2e-282 974.9 948 57.3
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 5.5e-282 974.5 944 57.3
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.2e-280 968.0 951 57.0
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 8.9e-280 967.2 935 58.7
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 2.6e-279 965.7 902 58.4
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 4.4e-279 964.9 898 60.6
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 4.4e-279 964.9 935 55.7
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.7e-278 963.0 944 57.7
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 5.4e-277 958.0 935 55.0
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 1.2e-276 956.8 937 55.3
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 4.5e-276 954.9 938 57.1
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 1.7e-275 953.0 934 54.2
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 2.9e-275 952.2 937 55.0
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 5.0e-275 951.4 913 57.2
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 1.5e-274 949.9 937 54.9
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.6e-274 948.0 936 58.0
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 8.0e-273 944.1 936 57.4
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 6.8e-272 941.0 941 57.1
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 4.4e-271 938.3 822 61.1
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 2.2e-270 936.0 945 55.3
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 6.4e-270 934.5 935 54.7
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 8.3e-270 934.1 981 53.6
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 1.4e-269 933.3 940 56.4
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.6e-268 928.3 936 56.5
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 7.8e-268 927.5 939 54.5
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 1.0e-267 927.2 938 54.1
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 1.0e-267 927.2 938 54.1
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 2.3e-267 926.0 943 55.8
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 3.0e-267 925.6 934 55.4
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 7.3e-266 921.0 939 54.6
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 9.5e-266 920.6 949 53.4
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.1e-264 917.1 977 53.8
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.4e-264 916.8 911 54.9
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 2.3e-264 916.0 928 54.2
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 2.0e-263 912.9 938 55.1
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 3.2e-261 905.6 940 54.7
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 4.1e-261 905.2 945 55.3
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 4.1e-261 905.2 845 59.1
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 2.3e-259 899.4 941 53.5
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 8.6e-259 897.5 942 55.3
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 1.5e-258 896.7 952 53.8
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 6.8e-256 887.9 978 52.6
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 2.0e-255 886.3 937 52.9
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 9.9e-255 884.0 937 52.1
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 6.4e-254 881.3 937 52.2
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 7.1e-253 877.9 938 52.3
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 2.5e-250 869.4 889 53.8
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.2e-249 867.1 962 52.7
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 2.1e-249 866.3 913 53.1
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.5e-247 860.1 955 53.0
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 1.5e-247 860.1 940 51.5
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 3.4e-247 859.0 955 53.0
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 1.3e-246 857.1 907 52.9
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 1.7e-246 856.7 940 51.5
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.4e-245 852.8 934 53.0
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 4.1e-245 852.0 890 54.2
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.3e-243 847.0 942 50.5
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 4.3e-242 842.0 932 53.0
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 1.4e-240 837.0 939 50.1
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 1.2e-239 833.9 936 50.3
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 1.5e-239 833.6 950 50.6
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 5.8e-239 831.6 934 51.7
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 3.2e-237 825.9 957 49.5
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 7.1e-237 824.7 938 50.6
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 1.6e-236 823.5 969 49.7
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 1.6e-236 823.5 652 65.2
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 2.1e-236 823.2 684 63.3
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.1e-234 817.4 939 50.8
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 1.6e-233 813.5 684 62.6
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 2.8e-233 812.8 903 49.4
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 4.8e-233 812.0 935 50.3
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 9.9e-231 804.3 932 50.0
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 2.7e-228 796.2 802 56.6
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 9.6e-226 787.7 993 47.5
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 5.6e-218 761.9 963 47.2
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.0e-214 751.1 966 47.0
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 1.3e-214 750.7 697 57.8
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.7e-206 723.8 856 48.8
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 9.4e-205 718.0 732 55.2
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 4.2e-197 692.6 602 62.6
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 5.5e-197 692.2 945 45.5
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 7.4e-194 681.8 970 44.7
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 2.2e-190 670.2 959 43.8
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.9e-189 667.2 950 44.3
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.0e-187 661.4 816 46.1
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 6.5e-174 615.5 422 73.7
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.3e-169 601.3 686 49.1
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.8e-163 580.9 409 71.9
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.0e-163 579.7 712 49.6
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.8e-160 570.9 490 58.2
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 4.5e-159 566.2 771 44.5
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.0e-158 565.1 708 47.0
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 6.1e-156 555.8 851 41.7
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 4.0e-147 526.6 964 38.9
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.3e-145 521.5 750 44.8
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.6e-140 504.6 642 44.4
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.1e-140 504.2 976 36.9
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 3.0e-118 430.6 519 48.0
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.1e-117 428.7 687 40.6
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.2e-114 418.7 543 47.7
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 2.1e-108 397.9 286 70.6
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 2.7e-103 380.9 696 34.8
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 7.4e-93 346.3 509 41.1
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 9.1e-83 312.8 408 44.4
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 1.2e-82 312.4 234 69.7
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 3.1e-75 287.7 237 62.9
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.3e-68 265.8 244 59.8
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.4e-67 261.5 175 74.3
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 2.0e-61 241.9 181 69.6
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.3e-60 239.2 175 69.7
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.7e-60 238.8 242 50.4
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.5e-48 197.2 132 78.0
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 5.7e-45 187.2 132 68.2
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.8e-43 182.2 312 39.7
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 5.4e-43 180.6 174 54.0
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.9e-40 172.2 219 46.6
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.1e-38 164.9 132 65.2
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 4.3e-32 144.4 196 46.9
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 5.2e-30 137.5 114 58.8
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 8.9e-30 136.7 302 36.4
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.6e-29 135.2 80 82.5
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 2.1e-26 125.6 522 24.7
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 2.9e-20 105.1 579 23.1
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 8.4e-20 103.6 348 31.0
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 1.5e-16 92.8 94 48.9
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.3e-12 79.7 43 88.4
GSVIVG01006141001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.1e-06 60.1 64 51.6
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 1.1e-06 60.1 47 55.3


User provided reference genes

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