Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 1.3e-97 360.1 239 100.0
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 1.2e-66 257.3 240 80.4
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 3.7e-65 252.3 241 81.3
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 1.2e-63 247.3 240 80.8
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 2.0e-63 246.5 241 78.4
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 6.6e-62 241.5 239 76.6
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 8.6e-62 241.1 240 79.6
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 1.1e-61 240.7 240 76.2
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 3.3e-61 239.2 243 77.0
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 3.3e-61 239.2 240 79.2
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 4.3e-61 238.8 239 78.2
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 5.6e-61 238.4 239 78.7
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 5.6e-61 238.4 240 78.3
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 1.6e-60 236.9 243 75.7
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 2.8e-60 236.1 239 78.2
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 2.8e-60 236.1 241 78.8
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.6e-60 235.7 239 77.0
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 4.7e-60 235.3 243 75.7
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 4.7e-60 235.3 266 60.5
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 6.2e-60 235.0 240 75.0
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 1.1e-59 234.2 240 75.4
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 1.1e-59 234.2 240 75.4
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 2.3e-59 233.0 236 76.3
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 3.1e-59 232.6 238 76.5
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 4.0e-59 232.3 240 77.1
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 6.8e-59 231.5 239 77.4
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 6.8e-59 231.5 240 77.9
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 8.9e-59 231.1 256 73.8
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 1.2e-58 230.7 240 76.2
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 1.5e-58 230.3 254 65.4
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 5.8e-58 228.4 240 76.2
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 1.7e-57 226.9 239 76.2
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 2.2e-57 226.5 240 75.4
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.2e-57 226.5 240 75.4
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 2.2e-57 226.5 239 74.1
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 3.7e-57 225.7 222 78.4
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 6.4e-57 224.9 194 88.7
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.4e-57 224.9 240 75.4
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 6.4e-57 224.9 240 73.8
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 6.4e-57 224.9 241 75.5
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 6.4e-57 224.9 239 75.3
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 8.3e-57 224.6 258 51.9
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 1.1e-56 224.2 186 88.7
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.4e-56 223.8 240 75.0
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 1.9e-56 223.4 243 74.1
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 7.1e-56 221.5 241 73.0
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 1.2e-55 220.7 245 73.5
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 2.7e-55 219.5 189 88.9
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-55 219.5 199 85.4
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 4.6e-55 218.8 184 89.1
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 4.6e-55 218.8 240 73.8
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 6.0e-55 218.4 199 84.9
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.3e-54 217.2 242 74.8
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 1.7e-54 216.9 242 73.6
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.3e-54 216.5 243 74.1
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 6.6e-54 214.9 237 74.7
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 8.6e-54 214.5 239 73.6
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 8.6e-54 214.5 239 73.6
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 1.1e-53 214.2 239 73.6
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 1.5e-53 213.8 245 72.2
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 1.9e-53 213.4 241 69.3
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 1.9e-53 213.4 233 75.5
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.3e-53 212.6 241 72.6
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.3e-53 212.2 202 68.3
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 1.2e-52 210.7 161 70.8
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 2.8e-52 209.5 247 70.9
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 2.8e-52 209.5 204 78.4
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 3.6e-52 209.1 247 71.3
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 6.2e-52 208.4 249 70.7
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 6.2e-52 208.4 241 71.8
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.4e-51 207.2 180 88.9
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 2.4e-51 206.5 242 70.2
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 4.0e-51 205.7 185 85.9
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 5.2e-51 205.3 245 71.0
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 8.9e-51 204.5 161 67.7
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.9e-51 204.5 258 50.8
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 2.0e-50 203.4 242 70.7
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 1.3e-49 200.7 185 84.9
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 1.7e-49 200.3 198 78.8
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 3.8e-49 199.1 245 67.8
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 4.9e-49 198.7 248 71.0
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.4e-49 198.4 239 72.8
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 8.4e-49 198.0 244 58.6
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 1.1e-48 197.6 244 68.9
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 1.1e-48 197.6 245 67.3
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 1.1e-48 197.6 181 85.1
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 1.1e-48 197.6 242 69.8
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 1.4e-48 197.2 249 68.3
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 1.4e-48 197.2 243 69.5
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 1.9e-48 196.8 190 82.6
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 2.4e-48 196.4 248 69.4
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 3.2e-48 196.1 245 67.8
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 3.2e-48 196.1 245 67.8
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 4.1e-48 195.7 183 84.7
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 9.2e-48 194.5 246 67.1
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.6e-47 193.7 183 83.1
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 2.7e-47 193.0 245 67.3
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 3.5e-47 192.6 243 67.1
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 1.3e-46 190.7 245 66.9
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.3e-46 190.7 199 77.9
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 1.3e-46 190.7 244 67.2
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.7e-46 190.3 212 55.2
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.7e-46 190.3 212 55.2
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.0e-46 189.5 136 72.1
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.9e-46 189.1 136 72.1
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.9e-46 189.1 136 72.1
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 5.1e-46 188.7 245 67.3
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 6.6e-46 188.3 188 80.3
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.5e-45 186.4 136 70.6
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 5.6e-45 185.3 245 66.1
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.3e-45 184.9 136 70.6
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.1e-44 183.3 242 50.8
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.2e-44 181.8 141 69.5
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.1e-44 181.4 140 70.7
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 6.9e-43 178.3 98 87.8
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.4e-42 175.6 239 51.9
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 4.9e-41 172.2 244 63.1
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.4e-41 171.8 158 89.9
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 7.1e-40 168.3 157 89.2
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 2.7e-39 166.4 166 83.7
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 1.0e-38 164.5 210 67.6
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 4.3e-37 159.1 243 65.0
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 1.1e-35 154.5 208 61.5
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 5.8e-34 148.7 106 71.7
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.3e-33 147.5 77 92.2
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 2.2e-33 146.7 105 69.5
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 7.1e-32 141.7 156 79.5
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 3.3e-21 106.3 64 76.6
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.5e-13 80.9 116 80.2
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 8.2e-12 75.1 82 51.2
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 8.2e-12 75.1 180 40.6


User provided reference genes

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