Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 4833.1 2432 100.0
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 3293.4 2450 69.2
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 3278.4 2440 68.9
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 3261.1 2442 68.7
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 3233.0 2443 67.8
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 3187.9 2441 66.2
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 3147.8 2402 66.8
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 3147.8 2429 65.5
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 3137.1 2444 65.4
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 3133.6 2463 65.7
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 3122.0 2449 65.1
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 3117.4 2432 65.1
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 3043.8 2430 64.7
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 3043.1 2433 63.2
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 3040.4 2440 64.1
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 3036.5 2432 63.4
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 3031.5 2432 63.3
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 3023.4 2436 63.3
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 3023.0 2432 64.1
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 3014.2 2444 62.9
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 3011.9 2436 62.4
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2999.9 2470 61.5
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2998.4 2470 61.4
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2990.3 2470 61.3
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2977.6 2470 61.1
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2949.1 2439 61.4
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2912.9 2431 62.7
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2890.9 2107 68.9
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2861.2 2480 60.4
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2854.3 2398 60.9
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2848.5 2425 60.5
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2843.1 2427 60.5
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2830.4 2423 60.0
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2829.7 2426 60.2
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2826.6 2380 60.7
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2824.3 2435 60.2
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2822.0 2424 60.0
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2817.0 2445 59.2
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2816.2 2425 59.8
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2811.6 2472 59.0
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2808.1 2435 59.5
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2796.1 2464 58.3
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2795.0 2464 58.2
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2786.1 2443 58.8
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2771.9 2432 59.2
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2768.4 2422 59.2
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2713.3 2433 58.7
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2709.9 2464 58.1
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2694.5 2430 57.9
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2683.3 2428 57.2
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2648.6 2431 57.8
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2646.3 2428 56.6
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2624.0 2431 56.3
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2620.5 2429 55.7
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2620.5 2393 56.8
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2617.8 2434 56.1
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2614.3 2434 55.8
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2612.0 2436 56.0
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2609.7 2430 56.0
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2602.8 2442 55.3
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2598.9 2434 56.1
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2597.8 2449 55.3
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2592.0 2447 55.0
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2590.1 2457 55.3
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2589.3 2442 56.3
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2584.3 2432 55.6
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2575.8 2436 55.4
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2570.8 2441 54.7
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2568.5 2437 55.7
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2568.1 2393 56.2
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2567.0 2443 55.6
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2561.2 2462 54.8
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2558.1 2437 55.0
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2556.9 2431 56.4
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2550.0 2451 54.7
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2543.8 2433 55.1
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2518.0 2445 53.6
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2516.9 2446 53.9
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2511.9 2444 53.6
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2498.8 2452 53.4
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2476.8 2448 53.4
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2471.8 2458 52.8
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2463.3 2456 53.4
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2445.2 2445 52.0
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2417.9 2438 52.2
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2401.3 2078 60.6
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2398.2 2078 60.4
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2173.7 2263 51.1
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 2157.1 1855 59.4
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2103.6 2417 46.8
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 2098.2 2424 47.9
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1907.9 2503 43.2
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1846.6 1464 63.7
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1842.4 1512 62.6
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1837.4 1465 63.5
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1804.6 2329 43.4
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1804.3 1646 57.7
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1752.6 1379 65.1
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1513.0 1460 54.7
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1468.8 1097 67.2
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1397.9 1378 53.6
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1324.3 1418 50.7
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1324.3 1572 46.8
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1261.5 1172 56.4
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1176.8 1045 57.7
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 0.0e+00 1127.1 1396 46.1
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1087.8 1049 53.9
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1077.4 1023 54.7
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 3.2e-281 973.4 2566 28.7
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 1.4e-263 914.8 918 51.5
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.3e-250 871.7 2094 30.6
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 5.2e-247 859.8 2147 29.8
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.5e-246 858.2 854 53.2
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 4.7e-240 836.6 1485 37.0
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 5.6e-233 813.1 770 52.3
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.3e-226 792.0 799 51.6
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 2.3e-210 738.0 2697 25.8
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.4e-178 632.5 864 41.0
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 9.4e-172 609.8 583 52.0
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 2.4e-127 462.2 323 67.5
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 3.9e-125 454.9 408 56.6
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 3.3e-124 451.8 478 50.8
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 4.0e-122 444.9 478 50.2
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 3.5e-110 405.2 257 76.7
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 7.1e-103 380.9 340 55.6
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.3e-93 349.4 314 58.9
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 9.0e-90 337.4 363 47.4
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.3e-83 317.0 430 41.6
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 6.2e-83 314.7 373 46.6
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 7.2e-71 274.6 240 57.9
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.9e-68 266.5 482 32.8
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 1.4e-66 260.4 436 37.2
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 3.4e-57 229.2 150 74.7
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.9e-56 226.1 382 38.5
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 3.8e-56 225.7 277 48.7
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.3e-51 208.4 269 47.2
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.2e-46 194.1 188 54.8
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 4.0e-45 189.1 122 75.4
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 5.7e-44 185.3 313 38.3
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 1.3e-43 184.1 134 69.4
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 2.2e-43 183.3 123 69.9
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 1.4e-42 180.6 193 53.9
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 5.9e-41 175.3 793 23.8
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 8.5e-40 171.4 135 68.9
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 1.5e-39 170.6 219 42.9
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 2.3e-37 163.3 110 73.6
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 4.1e-34 152.5 319 34.5
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 4.7e-30 139.0 100 65.0
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 5.2e-29 135.6 152 49.3
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 1.6e-25 124.0 140 45.0
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.7e-24 120.6 83 71.1
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.3e-24 120.2 193 39.9
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 4.3e-23 115.9 248 31.0
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.3e-19 104.4 199 36.7
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.9e-19 102.4 97 51.5
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 1.4e-18 100.9 106 49.1
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 4.6e-17 95.9 76 56.6
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 5.9e-17 95.5 76 56.6
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 4.3e-15 89.4 95 44.2
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 4.4e-12 79.3 107 41.1
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.9e-11 75.9 101 42.6
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 2.4e-10 73.6 74 54.1
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 1.2e-09 71.2 126 35.7
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.0e-08 68.2 72 47.2
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 1.7e-08 67.4 42 78.6
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 3.9e-08 66.2 133 32.3
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 4.3e-07 62.8 86 45.3


User provided reference genes

Program Settings