Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 0.0e+00 1301.6 744 100.0
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 0.0e+00 1107.8 748 87.8
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.6e-290 1001.9 754 81.2
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 2.2e-289 998.8 755 80.1
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 2.4e-288 995.3 753 80.1
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 4.7e-284 981.1 745 79.7
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 1.1e-283 979.9 761 78.4
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 6.8e-283 977.2 753 78.9
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.1e-279 965.7 753 78.2
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 2.7e-279 965.3 795 63.8
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 2.7e-279 965.3 754 79.3
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 2.7e-279 965.3 754 79.3
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 9.6e-277 956.8 760 78.4
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 2.8e-276 955.3 752 78.2
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 8.1e-276 953.7 751 77.4
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 1.8e-275 952.6 755 78.5
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 6.4e-273 944.1 640 76.4
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 6.4e-273 944.1 779 74.8
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 7.1e-272 940.6 757 77.0
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 4.6e-271 937.9 762 75.6
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 7.8e-271 937.2 640 73.6
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 2.1e-268 929.1 760 74.7
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 2.8e-268 928.7 829 71.5
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 3.6e-268 928.3 746 75.3
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 6.2e-268 927.5 750 76.7
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 7.6e-266 920.6 763 75.1
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 2.9e-265 918.7 780 74.6
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 2.9e-265 918.7 752 75.1
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.9e-264 916.0 758 76.5
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 2.4e-264 915.6 758 76.0
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 2.4e-264 915.6 757 74.1
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 3.2e-264 915.2 752 75.5
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 2.1e-263 912.5 752 75.5
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 3.0e-262 908.7 790 71.5
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 3.9e-262 908.3 763 74.3
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.1e-261 906.7 761 75.0
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 2.1e-260 902.5 747 74.2
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.1e-259 900.2 757 75.6
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 4.0e-259 898.3 753 75.3
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 5.3e-259 897.9 751 74.2
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-258 896.7 757 75.4
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-258 896.7 754 74.4
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-258 896.7 754 74.4
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 2.0e-258 896.0 757 75.6
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.0e-258 896.0 757 75.6
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 2.0e-258 896.0 854 67.8
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.6e-258 895.6 755 74.4
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.6e-258 894.0 755 74.3
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 2.9e-257 892.1 776 72.0
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 4.9e-257 891.3 778 71.1
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 1.1e-256 890.2 758 75.6
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 2.5e-256 889.0 788 61.4
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 9.3e-256 887.1 751 74.2
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 1.6e-255 886.3 749 74.0
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.6e-255 884.8 781 73.1
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.3e-254 883.2 749 73.3
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 4.3e-253 878.2 756 73.9
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 1.3e-252 876.7 746 72.4
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.3e-252 876.7 754 72.8
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 6.2e-252 874.4 746 70.9
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 1.1e-251 873.6 755 73.2
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 4.0e-251 871.7 755 73.0
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 5.3e-251 871.3 755 73.1
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.7e-249 866.3 768 73.0
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 3.8e-249 865.1 774 69.4
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 3.2e-248 862.1 755 73.1
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 5.5e-248 861.3 752 71.5
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 9.3e-248 860.5 746 71.4
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 9.3e-248 860.5 755 72.5
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 2.7e-247 859.0 774 62.7
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 8.7e-246 854.0 799 61.1
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.6e-244 849.7 783 68.2
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 2.8e-244 849.0 758 72.6
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 2.4e-243 845.9 746 70.2
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 4.1e-243 845.1 751 71.8
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 5.3e-243 844.7 748 70.5
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 5.3e-243 844.7 748 70.2
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.3e-241 840.1 758 71.9
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 2.9e-241 839.0 759 72.1
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.1e-240 837.0 798 67.5
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 4.2e-240 835.1 746 70.1
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 3.6e-239 832.0 755 71.4
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.4e-238 830.1 755 71.1
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 1.4e-238 830.1 748 69.7
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 2.3e-238 829.3 758 70.3
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 3.0e-238 828.9 748 71.3
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 1.5e-237 826.6 747 69.5
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 2.0e-237 826.2 749 69.4
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 2.5e-237 825.9 748 69.5
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 4.3e-237 825.1 750 69.2
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 2.2e-236 822.8 746 69.3
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.2e-234 817.0 644 67.7
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.5e-234 816.6 753 69.7
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 2.2e-233 812.8 685 73.6
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 2.3e-230 802.7 761 67.3
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 9.7e-229 797.3 752 68.0
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 4.5e-226 788.5 840 64.2
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 2.7e-223 779.2 749 67.2
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 5.7e-221 771.5 782 64.1
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.2e-218 763.8 778 55.5
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 1.1e-216 757.3 792 65.8
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 5.5e-216 755.0 752 66.2
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 7.5e-213 744.6 811 64.0
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.2e-210 737.3 749 64.6
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 2.2e-204 716.5 750 60.4
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 6.8e-190 668.3 565 65.5
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.9e-188 662.9 1244 44.5
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.7e-186 656.4 720 62.5
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.2e-183 647.5 551 76.8
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.6e-175 620.5 767 57.0
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.6e-167 594.0 772 55.6
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 2.8e-167 593.2 757 58.3
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.0e-165 587.0 452 67.7
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 3.4e-165 586.3 757 57.7
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.7e-162 576.6 536 57.6
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 5.1e-161 572.4 756 57.4
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 5.8e-157 558.9 765 55.2
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 3.1e-142 510.0 439 61.3
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 6.1e-122 442.6 608 44.7
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 4.4e-112 409.8 385 54.8
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 4.1e-110 403.3 366 81.1
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.1e-107 395.2 384 78.6
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 4.0e-105 386.7 383 77.0
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.6e-98 364.8 331 60.1
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.4e-96 357.1 304 89.5
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 6.5e-92 342.8 386 50.0
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 1.3e-87 328.6 206 75.2
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 7.8e-77 292.7 485 39.6
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 3.1e-73 280.8 848 40.1
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 4.4e-72 276.9 755 32.8
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.8e-72 276.6 301 53.8
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.9e-65 252.7 165 77.0
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 9.2e-62 242.7 479 35.5
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.3e-55 222.2 149 74.5
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.2e-53 215.7 704 29.4
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-49 202.6 230 51.7
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.6e-45 188.7 230 49.6
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-39 169.1 98 84.7
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-39 168.3 230 44.8
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-37 162.2 90 86.7
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.9e-35 155.2 149 56.4
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-33 149.4 140 58.6
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 4.0e-33 147.5 186 51.1
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.3e-33 147.1 82 87.8
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.4e-31 140.2 84 83.3
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-30 137.9 74 87.8
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 6.7e-28 130.2 93 73.1
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-27 128.6 102 67.6
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-26 125.6 67 85.1
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 2.8e-26 124.8 109 61.5
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 4.0e-25 120.9 115 60.0
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 3.4e-24 117.9 107 62.6
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.3e-23 115.9 70 80.0
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.1e-22 112.8 158 46.8
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-22 112.5 61 86.9
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-22 111.3 61 85.2
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.3e-22 109.8 60 88.3
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 6.0e-21 107.1 155 93.5
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 7.4e-19 100.1 154 90.9
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 7.4e-19 100.1 134 48.5
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 3.1e-17 94.7 186 38.2
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-15 88.2 78 57.7
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.1e-12 77.4 60 70.0
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 6.7e-12 77.0 150 39.3
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.7e-12 77.0 55 63.6
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 3.1e-09 68.2 91 44.0
SEGI_01359 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 2.0e-08 65.5 113 38.1
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 4.5e-08 64.3 41 73.2
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 5.9e-08 63.9 304 24.3
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.7e-07 62.4 31 93.5
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.2e-07 62.0 30 96.7
Gohir.A11G265400 Gossypium hirsutum HOM05D000055 ORTHO05D013390 5.0e-07 60.8 46 71.7
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 6.5e-07 60.5 31 90.3
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 1.4e-06 59.3 57 56.1
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 2.5e-06 58.5 31 83.9
Gohir.1Z049433 Gossypium hirsutum HOM05D004098 ORTHO05D021823 5.5e-06 57.4 31 87.1
Lsat_1_v5_gn_3_135720 Lactuca sativa HOM05D004098 ORTHO05D005215 7.2e-06 57.0 36 77.8


User provided reference genes

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