Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 5.1e-70 267.7 143 100.0
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.6e-58 228.8 143 82.5
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.1e-55 219.2 143 79.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.6e-47 193.0 141 71.6
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 2.1e-47 192.6 141 69.5
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 4.7e-47 191.4 141 71.6
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 2.3e-46 189.1 141 67.4
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 5.2e-46 188.0 140 69.3
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 5.2e-46 188.0 141 69.5
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.0e-45 186.0 141 66.7
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.4e-45 184.9 140 68.6
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 1.3e-44 183.3 140 67.9
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 6.3e-44 181.0 140 67.1
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.1e-43 180.3 144 66.7
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.1e-43 178.7 139 66.2
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 4.1e-43 178.3 143 67.8
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.6e-42 176.4 140 65.7
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.0e-42 176.0 141 66.0
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 3.5e-42 175.3 141 67.4
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.3e-41 173.3 141 65.2
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 3.8e-41 171.8 143 65.7
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 1.9e-40 169.5 143 65.7
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 2.5e-40 169.1 141 65.2
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.3e-40 168.7 143 64.3
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.3e-40 168.7 143 64.3
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 5.5e-40 167.9 141 63.8
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 5.5e-40 167.9 141 63.8
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 7.2e-40 167.5 143 65.7
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 1.2e-39 166.8 141 63.8
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 1.6e-39 166.4 141 62.4
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.6e-39 166.4 141 63.1
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.6e-39 166.4 141 63.1
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.6e-39 166.4 141 63.1
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.1e-39 166.0 142 65.5
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 2.1e-39 166.0 141 62.4
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 2.8e-39 165.6 143 63.6
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.8e-39 165.6 143 63.6
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 2.8e-39 165.6 141 62.4
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 3.6e-39 165.2 143 64.3
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 3.6e-39 165.2 141 64.5
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 4.7e-39 164.9 144 63.2
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 6.1e-39 164.5 141 64.5
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 8.0e-39 164.1 141 61.7
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.0e-38 163.7 141 63.1
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.4e-38 163.3 145 64.8
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 1.4e-38 163.3 141 61.7
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 1.4e-38 163.3 143 63.6
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.8e-38 162.9 141 62.4
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.8e-38 162.9 141 62.4
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 1.8e-38 162.9 137 65.0
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.3e-38 162.5 141 61.0
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 2.3e-38 162.5 141 61.7
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 3.0e-38 162.2 141 61.7
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.0e-38 162.2 143 64.3
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 4.0e-38 161.8 141 61.0
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.0e-38 161.8 141 59.6
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 5.2e-38 161.4 144 64.6
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 5.2e-38 161.4 141 61.7
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 8.9e-38 160.6 142 62.0
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 8.9e-38 160.6 141 62.4
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 8.9e-38 160.6 141 61.0
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 8.9e-38 160.6 141 62.4
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.2e-37 160.2 143 62.9
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 1.5e-37 159.8 132 63.6
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.5e-37 159.8 140 62.1
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 1.5e-37 159.8 141 62.4
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.0e-37 159.5 141 61.0
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 2.0e-37 159.5 141 62.4
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 2.0e-37 159.5 141 62.4
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 4.4e-37 158.3 143 62.2
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 4.4e-37 158.3 141 63.1
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 9.8e-37 157.1 142 62.7
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.3e-36 156.8 141 60.3
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.2e-36 156.0 141 62.4
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 3.7e-36 155.2 141 61.7
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 4.9e-36 154.8 146 61.0
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 4.9e-36 154.8 141 61.0
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 1.1e-35 153.7 141 61.0
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.4e-35 153.3 141 59.6
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.8e-35 152.9 141 61.0
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.8e-35 152.9 142 62.7
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.6e-34 149.8 142 58.5
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.0e-34 149.4 142 61.3
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.0e-34 149.4 142 61.3
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.0e-34 149.4 141 61.0
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 4.5e-34 148.3 156 55.1
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 4.5e-34 148.3 142 59.2
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 4.5e-34 148.3 139 59.0
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 4.5e-34 148.3 139 59.0
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 5.0e-33 144.8 141 57.4
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.6e-33 144.4 123 63.4
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.1e-32 143.7 141 57.4
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.1e-32 143.7 141 57.4
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.3e-32 142.1 141 56.7
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 4.3e-32 141.7 127 59.8
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 5.6e-32 141.4 171 52.6
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 7.3e-32 141.0 142 59.2
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.1e-31 139.4 141 56.0
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.1e-31 139.4 141 55.3
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 2.8e-31 139.0 142 57.7
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 3.6e-31 138.7 102 70.6
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 4.7e-31 138.3 141 55.3
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.7e-31 138.3 141 55.3
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 4.7e-31 138.3 88 81.8
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 4.7e-31 138.3 122 63.9
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 6.1e-31 137.9 140 56.4
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.0e-30 137.1 187 47.6
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.4e-30 136.7 138 58.7
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 3.0e-30 135.6 115 65.2
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 3.0e-30 135.6 136 57.4
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.0e-30 135.6 115 64.3
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 5.2e-30 134.8 140 56.4
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 5.2e-30 134.8 140 56.4
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 5.2e-30 134.8 140 56.4
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 5.2e-30 134.8 141 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 6.8e-30 134.4 138 56.5
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 6.8e-30 134.4 141 59.6
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 6.8e-30 134.4 140 55.0
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 1.2e-29 133.7 144 54.2
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.5e-29 133.3 146 54.1
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.5e-29 133.3 141 55.3
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.5e-29 133.3 141 55.3
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.6e-29 132.5 141 57.4
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 2.6e-29 132.5 109 64.2
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.6e-29 132.5 142 55.6
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 3.4e-29 132.1 141 58.9
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 3.4e-29 132.1 141 57.4
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 5.8e-29 131.3 141 58.9
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 5.8e-29 131.3 206 42.2
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 9.8e-29 130.6 141 58.2
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 9.8e-29 130.6 142 51.4
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 4.9e-28 128.3 145 51.7
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 6.4e-28 127.9 142 57.0
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 1.8e-27 126.3 141 56.7
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 5.4e-27 124.8 84 76.2
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 9.2e-27 124.0 139 51.1
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 9.2e-27 124.0 141 51.1
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 1.6e-26 123.2 141 51.8
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 6.0e-26 121.3 120 56.7
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 7.8e-26 120.9 140 50.0
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 7.8e-26 120.9 97 70.1
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 3.0e-25 119.0 141 48.2
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.5e-24 116.7 103 61.2
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.9e-24 116.3 115 56.5
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.9e-24 116.3 142 50.7
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 5.6e-24 114.8 153 47.1
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.1e-23 112.8 159 44.7
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 8.0e-23 110.9 89 64.0
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.0e-23 110.9 79 70.9
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.1e-22 110.5 117 54.7
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 1.8e-22 109.8 83 68.7
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.8e-22 109.8 150 47.3
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 3.1e-22 109.0 143 49.0
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 6.8e-22 107.8 150 47.3
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.2e-21 107.1 168 41.7
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 1.2e-21 107.1 130 50.0
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.5e-21 106.7 105 56.2
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 2.9e-20 102.4 253 33.2
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 8.3e-20 100.9 79 63.3
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.4e-19 99.4 84 64.3
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 1.2e-18 97.1 152 44.7
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 5.6e-16 88.2 77 57.1
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 9.5e-16 87.4 142 43.7
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 2.8e-15 85.9 141 41.1
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 4.0e-14 82.0 79 64.6
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 5.8e-13 78.2 59 66.1
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.3e-12 77.0 79 58.2
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 1.9e-11 73.2 86 52.3
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 9.2e-11 70.9 82 42.7
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.0e-10 68.2 56 62.5
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.7e-09 66.6 56 62.5
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 7.3e-08 61.2 51 60.8
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 7.3e-08 61.2 71 50.7
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 9.5e-08 60.8 97 42.3
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 4.7e-07 58.5 41 70.7


User provided reference genes

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