Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26627 Avicennia marina HOM05D005132 ORTHO05D005823 2.1e-92 342.4 181 100.0
MSTRG.9253 Avicennia marina HOM05D005132 ORTHO05D005823 2.1e-92 342.4 181 100.0
SGA_v2.0_scaffold318G48481 Striga asiatica HOM05D005132 ORTHO05D005823 1.3e-78 296.6 180 86.1
Oeu017691.1 Olea europaea HOM05D005132 ORTHO05D005823 6.5e-78 294.3 179 86.0
Migut.J01005 Erythranthe guttata HOM05D005132 ORTHO05D005823 1.4e-77 293.1 179 83.8
CSS0005836 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 1.9e-77 292.7 180 84.4
CSS0048654 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 1.9e-77 292.7 180 84.4
Peaxi162Scf00069g00611 Petunia axillaris HOM05D005132 ORTHO05D005823 1.2e-76 290.0 181 82.9
SalBow3G0486 Salvia bowleyana HOM05D005132 ORTHO05D005823 1.2e-76 290.0 181 84.5
Oeu056871.1 Olea europaea HOM05D005132 ORTHO05D005823 3.6e-76 288.5 180 83.3
Dinv21174 Davidia involucrata HOM05D005132 ORTHO05D005823 7.9e-76 287.3 180 83.9
Rhsim03G0070200 Rhododendron simsii HOM05D005132 ORTHO05D005823 3.9e-75 285.0 180 82.2
vmacro07442 Vaccinium macrocarpon HOM05D005132 ORTHO05D005823 8.8e-75 283.9 180 82.2
Dinv31714 Davidia involucrata HOM05D005132 ORTHO05D005823 2.6e-74 282.3 180 80.6
Cc00_g15480 Coffea canephora HOM05D005132 ORTHO05D005823 3.3e-74 282.0 180 81.1
DCAR_013410 Daucus carota HOM05D005132 ORTHO05D005823 4.4e-74 281.6 180 79.4
Hma1.2p1_0769F.1_g215740 Hydrangea macrophylla HOM05D005132 ORTHO05D005823 4.4e-74 281.6 179 80.4
HanXRQChr13g0390111 Helianthus annuus HOM05D005132 ORTHO05D005823 1.7e-73 279.6 179 81.6
FvH4_6g19390 Fragaria vesca HOM05D005132 ORTHO05D005823 2.8e-73 278.9 179 81.0
TPR.G14792 Trifolium pratense HOM05D005132 ORTHO05D005823 2.8e-73 278.9 180 80.0
Lsat_1_v5_gn_5_165621 Lactuca sativa HOM05D005132 ORTHO05D005823 3.7e-73 278.5 177 80.8
Sopen09g004870 Solanum pennellii HOM05D005132 ORTHO05D005823 4.8e-73 278.1 181 80.7
PGSC0003DMG400008862 Solanum tuberosum HOM05D005132 ORTHO05D005823 4.8e-73 278.1 181 80.7
Lj2A142G15 Lonicera japonica HOM05D005132 ORTHO05D005823 8.2e-73 277.3 180 79.4
Sc02g0000440 Simmondsia chinensis HOM05D005132 ORTHO05D005823 8.2e-73 277.3 180 80.6
Solyc09g010130.4 Solanum lycopersicum HOM05D005132 ORTHO05D005823 1.1e-72 276.9 181 80.1
Ca_30897_v3 Cicer arietinum L. HOM05D005132 ORTHO05D005823 1.8e-72 276.2 180 79.4
Lj5g0026419 Lotus japonicus HOM05D005132 ORTHO05D005823 1.8e-72 276.2 180 79.4
Medtr1g059650 Medicago truncatula HOM05D005132 ORTHO05D005823 1.8e-72 276.2 180 79.4
HanXRQChr01g0010191 Helianthus annuus HOM05D005132 ORTHO05D005823 3.1e-72 275.4 179 79.9
CSS0047631 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 5.3e-72 274.6 181 80.1
CAN.G397.82 Capsicum annuum HOM05D005132 ORTHO05D005823 5.3e-72 274.6 179 81.0
Psat6g084200 Pisum sativum HOM05D005132 ORTHO05D005823 5.3e-72 274.6 180 78.9
RcHm_v2.0_Chr3g0474681 Rosa chinensis HOM05D005132 ORTHO05D005823 5.3e-72 274.6 179 79.9
Phvul.007G153200 Phaseolus vulgaris HOM05D005132 ORTHO05D005823 7.0e-72 274.2 180 78.3
CiPaw.09G016600 Carya illinoinensis HOM05D005132 ORTHO05D005823 1.5e-71 273.1 180 78.3
Potri.016G076400 Populus trichocarpa HOM05D005132 ORTHO05D005823 1.5e-71 273.1 181 77.9
Glyma.10G075200 Glycine max HOM05D005132 ORTHO05D005823 2.0e-71 272.7 180 78.3
MD12G1029600 Malus domestica HOM05D005132 ORTHO05D005823 2.0e-71 272.7 179 78.8
Manes.09G053000 Manihot esculenta HOM05D005132 ORTHO05D005823 2.0e-71 272.7 179 78.2
VMungo0720G1157 Vigna mungo HOM05D005132 ORTHO05D005823 2.0e-71 272.7 180 77.2
Thecc.05G094200 Theobroma cacao HOM05D005132 ORTHO05D005823 2.6e-71 272.3 180 78.3
FAN05G1205 Fragaria x ananassa HOM05D005132 ORTHO05D005823 5.9e-71 271.2 188 77.1
FAN14G5731 Fragaria x ananassa HOM05D005132 ORTHO05D005823 5.9e-71 271.2 188 77.1
Glyma.02G201400 Glycine max HOM05D005132 ORTHO05D005823 5.9e-71 271.2 180 77.8
GSVIVG01033883001 Vitis vinifera HOM05D005132 ORTHO05D005823 5.9e-71 271.2 179 77.1
Duzib093G1682 Durio zibethinus HOM05D005132 ORTHO05D005823 7.7e-71 270.8 180 78.9
TWI74G0814 Tripterygium wilfordii HOM05D005132 ORTHO05D005823 1.0e-70 270.4 180 77.2
Potri.006G209600 Populus trichocarpa HOM05D005132 ORTHO05D005823 1.7e-70 269.6 180 77.2
Prupe.7G102200 Prunus persica HOM05D005132 ORTHO05D005823 3.8e-70 268.5 180 77.2
PGR004G2516 Punica granatum HOM05D005132 ORTHO05D005823 3.8e-70 268.5 179 77.7
TAR633G0805 Trochodendron aralioides HOM05D005132 ORTHO05D005823 3.8e-70 268.5 180 77.2
Cfa016640 Carpinus fangiana HOM05D005132 ORTHO05D005823 5.0e-70 268.1 180 76.7
Ca_22304_v3 Cicer arietinum L. HOM05D005132 ORTHO05D005823 5.0e-70 268.1 180 78.3
MD14G1029900 Malus domestica HOM05D005132 ORTHO05D005823 5.0e-70 268.1 179 77.7
Ciclev10013553m.g Citrus clementina HOM05D005132 ORTHO05D005823 1.1e-69 266.9 180 76.1
AUR62006221 Chenopodium quinoa HOM05D005132 ORTHO05D005823 1.4e-69 266.5 181 76.8
ECA248G2482 Erigeron canadensis HOM05D005132 ORTHO05D005823 1.9e-69 266.2 180 77.8
Gohir.A09G141200 Gossypium hirsutum HOM05D005132 ORTHO05D005823 1.9e-69 266.2 180 76.7
COL.COLO4_03548 Corchorus olitorius HOM05D005132 ORTHO05D005823 2.5e-69 265.8 180 77.2
Gorai.006G153000 Gossypium raimondii HOM05D005132 ORTHO05D005823 2.5e-69 265.8 180 76.7
Nn6g34827 Nelumbo nucifera HOM05D005132 ORTHO05D005823 2.5e-69 265.8 180 75.0
Lalb_Chr02g0154801 Lupinus albus HOM05D005132 ORTHO05D005823 4.2e-69 265.0 179 74.9
Gorai.009G400000 Gossypium raimondii HOM05D005132 ORTHO05D005823 5.5e-69 264.6 179 76.5
QL07p038312 Quercus lobata HOM05D005132 ORTHO05D005823 5.5e-69 264.6 180 75.0
Hund03937 Selenicereus undatus HOM05D005132 ORTHO05D005823 5.5e-69 264.6 180 75.6
Atru.chr8.1454 Acer truncatum HOM05D005132 ORTHO05D005823 7.2e-69 264.2 181 75.7
CSS0032993 Camellia sinensis var. sinensis HOM05D005132 ORTHO05D005823 7.2e-69 264.2 181 76.8
Gohir.D04G097400 Gossypium hirsutum HOM05D005132 ORTHO05D005823 1.6e-68 263.1 179 76.0
Gohir.D09G133500 Gossypium hirsutum HOM05D005132 ORTHO05D005823 1.6e-68 263.1 180 76.1
CANSAT64G2405 Cannabis sativa HOM05D005132 ORTHO05D005823 3.6e-68 261.9 179 74.3
Haze_19646 Corylus avellana HOM05D005132 ORTHO05D005823 3.6e-68 261.9 180 75.6
Duzib106G2047 Durio zibethinus HOM05D005132 ORTHO05D005823 3.6e-68 261.9 181 74.6
unitig_8.g4044 Utricularia gibba HOM05D005132 ORTHO05D005823 8.0e-68 260.8 177 74.6
TWI77G0075 Tripterygium wilfordii HOM05D005132 ORTHO05D005823 1.4e-67 260.0 181 74.6
Aqoxy2G01075 Aquilegia oxysepala HOM05D005132 ORTHO05D005823 1.8e-67 259.6 180 74.4
Nitab4.5_0001875g0030 Nicotiana tabacum HOM05D005132 ORTHO05D005823 1.8e-67 259.6 181 76.2
THA.LOC104816597 Tarenaya hassleriana HOM05D005132 ORTHO05D005823 1.8e-67 259.6 180 74.4
Sabra06G0161500 Salix brachista HOM05D005132 ORTHO05D005823 3.0e-67 258.8 180 76.1
FAN02G1643 Fragaria x ananassa HOM05D005132 ORTHO05D005823 3.9e-67 258.5 179 77.1
Gohir.A04G048400 Gossypium hirsutum HOM05D005132 ORTHO05D005823 3.9e-67 258.5 179 74.9
Eucgr.A02640 Eucalyptus grandis HOM05D005132 ORTHO05D005823 5.2e-67 258.1 179 74.3
CDE08G1477 Ceratophyllum demersum HOM05D005132 ORTHO05D005823 6.7e-67 257.7 180 73.9
ClCG04G010170 Citrullus lanatus HOM05D005132 ORTHO05D005823 6.7e-67 257.7 179 75.4
MELO3C024558.2 Cucumis melo HOM05D005132 ORTHO05D005823 2.0e-66 256.1 179 74.3
BcaC06g32323 Brassica carinata HOM05D005132 ORTHO05D005823 5.7e-66 254.6 180 73.3
A10p30280 Brassica napus HOM05D005132 ORTHO05D005823 5.7e-66 254.6 180 73.3
BolC9t59825H Brassica oleracea HOM05D005132 ORTHO05D005823 5.7e-66 254.6 180 73.3
BraA10t45066Z Brassica rapa HOM05D005132 ORTHO05D005823 5.7e-66 254.6 180 73.3
CsaV3_6G040790 Cucumis sativus L. HOM05D005132 ORTHO05D005823 5.7e-66 254.6 179 73.7
Sed0017122 Sechium edule HOM05D005132 ORTHO05D005823 5.7e-66 254.6 179 76.0
AL6G16110 Arabidopsis lyrata HOM05D005132 ORTHO05D005823 7.4e-66 254.2 180 73.3
Sp6g36750 Schrenkiella parvula HOM05D005132 ORTHO05D005823 7.4e-66 254.2 179 73.2
PSO801G0294 Papaver somniferum HOM05D005132 ORTHO05D005823 1.3e-65 253.4 179 72.1
C09p70690 Brassica napus HOM05D005132 ORTHO05D005823 1.7e-65 253.1 180 72.8
Nn2g14214 Nelumbo nucifera HOM05D005132 ORTHO05D005823 2.2e-65 252.7 180 73.3
Thhalv10013711m.g Eutrema salsugineum HOM05D005132 ORTHO05D005823 2.8e-65 252.3 180 73.3
AT5G06140 Arabidopsis thaliana HOM05D005132 ORTHO05D005823 8.2e-65 250.8 180 72.2
CARHR206850 Cardamine hirsuta HOM05D005132 ORTHO05D005823 8.2e-65 250.8 180 72.8
Carub.0006s0502 Capsella rubella HOM05D005132 ORTHO05D005823 1.4e-64 250.0 180 71.7
PSO339G3236 Papaver somniferum HOM05D005132 ORTHO05D005823 1.8e-64 249.6 178 71.3
Ah.15g090790 Amaranthus hybridus HOM05D005132 ORTHO05D005823 4.1e-64 248.4 182 72.5
EL10Ac7g16880 Beta vulgaris HOM05D005132 ORTHO05D005823 3.5e-63 245.4 190 70.0
TAR623G1340 Trochodendron aralioides HOM05D005132 ORTHO05D005823 1.0e-62 243.8 180 71.7
Aa31LG11G7120 Aethionema arabicum HOM05D005132 ORTHO05D005823 3.8e-62 241.9 181 70.7
Hund19900 Selenicereus undatus HOM05D005132 ORTHO05D005823 5.5e-61 238.0 180 68.3
HPP92_001972 Vanilla planifolia HOM05D005132 ORTHO05D005823 5.5e-61 238.0 179 67.6
Zm00001eb147050 Zea mays HOM05D005132 ORTHO05D005823 1.2e-60 236.9 180 66.7
Zm00001eb366800 Zea mays HOM05D005132 ORTHO05D005823 2.1e-60 236.1 180 66.1
ATR0820G210 Amborella trichopoda HOM05D005132 ORTHO05D005823 2.7e-60 235.7 179 68.2
SEGI_36568 Sequoiadendron giganteum HOM05D005132 ORTHO05D005823 1.7e-57 226.5 180 63.9
Os01g0862300 Oryza sativa ssp. japonica HOM05D005132 ORTHO05D005823 4.8e-57 224.9 180 63.3
Ah.08g210440 Amaranthus hybridus HOM05D002070 ORTHO05D005823 2.4e-56 222.6 179 66.5
arahy.Tifrunner.gnm1.ann1.3C6LBG Arachis hypogaea HOM05D005132 ORTHO05D005823 3.8e-54 215.3 180 65.0
arahy.Tifrunner.gnm1.ann1.XB6NYF Arachis hypogaea HOM05D005132 ORTHO05D005823 3.8e-54 215.3 180 65.0
Sabra16G0081700 Salix brachista HOM05D005132 ORTHO05D005823 4.2e-53 211.8 181 64.1
C02p02600 Brassica napus HOM05D000493 ORTHO05D005823 8.0e-52 207.6 180 64.4
BolC2t06226H Brassica oleracea HOM05D000493 ORTHO05D005823 8.0e-52 207.6 180 64.4
HanXRQChr01g0010201 Helianthus annuus HOM05D005132 ORTHO05D005823 2.2e-49 199.5 160 69.4
SMO347G0437 Selaginella moellendorffii HOM05D005132 ORTHO05D005823 8.3e-49 197.6 179 57.5
Mapoly0051s0019 Marchantia polymorpha HOM05D005132 ORTHO05D005823 5.0e-46 188.3 179 52.0
Actinidia05405 Actinidia chinensis HOM05D005132 ORTHO05D005823 1.1e-45 187.2 162 67.3
SHI23818 Sapria himalayana HOM05D005132 ORTHO05D005823 2.3e-43 179.5 154 66.2
TPR.G39973 Trifolium pratense HOM05D005132 ORTHO05D005823 2.8e-41 172.6 112 81.2
Hma1.2p1_0769F.1_g215730 Hydrangea macrophylla HOM05D005132 ORTHO05D005823 4.9e-41 171.8 110 80.9
BcaC06g32586 Brassica carinata HOM05D005132 ORTHO05D005823 2.6e-34 149.4 112 69.6
CDE06G1014 Ceratophyllum demersum HOM05D005132 ORTHO05D005823 7.5e-34 147.9 100 76.0
AagrBONN_evm.TU.Sc2ySwM_362.2636 Anthoceros agrestis HOM05D005132 ORTHO05D005823 3.0e-30 136.0 150 48.0
Pp3c4_27410 Physcomitrium patens HOM05D005132 ORTHO05D005823 1.2e-28 130.6 177 37.9
CBR_g20439 Chara braunii HOM05D005132 ORTHO05D005823 1.2e-26 124.0 180 37.8
Sabra16G0079100 Salix brachista HOM05D005132 ORTHO05D005823 7.8e-23 111.3 170 41.8
Cpa.g.sc104.100 Carica papaya HOM05D005132 ORTHO05D005823 1.0e-22 110.9 143 47.6
BcaB05g21681 Brassica carinata HOM05D000493 ORTHO05D005823 3.0e-22 109.4 113 57.5
BcaC01g04574 Brassica carinata HOM05D005132 ORTHO05D005823 1.1e-19 100.9 131 50.4
PRCOL_00000759 Prasinoderma coloniale HOM05D005132 ORTHO05D005823 1.2e-18 97.4 182 33.5
BolC7t42788H Brassica oleracea HOM05D005132 ORTHO05D005823 5.4e-16 88.6 65 70.8
BolC3t15920H Brassica oleracea HOM05D005132 ORTHO05D005823 1.6e-15 87.0 65 69.2
A07p05760 Brassica napus HOM05D005132 ORTHO05D005823 5.1e-14 82.0 59 69.5
C07p22110 Brassica napus HOM05D005132 ORTHO05D005823 6.6e-14 81.6 65 64.6
Cre06.g281050 Chlamydomonas reinhardtii HOM05D005132 ORTHO05D005823 3.1e-11 72.8 179 27.9


User provided reference genes

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