Gene: AT5G06140

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G06140
  • Transcript Identifier AT5G06140.1
  • Gene Type Coding gene
  • Location Chr5 : 1856212-1858752 : negative

Gene Family Information

  • ID HOM05D005132
  • #Genes/#Species 146/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G06140.1
  • symbol SNX1
  • Alias ATSNX1,ARABIDOPSIS THALIANA SORTING NEXIN 1
  • uniprot Q9FG38

Descriptions

  • Description sorting nexin 1
  • Computational description sorting nexin 1 (SNX1); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: in 7 processes; LOCATED IN: endosome, microsome, retromer complex, membrane, multivesicular body; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Vps5 C-terminal (InterPro:IPR015404), Phox-like (InterPro:IPR001683); BEST Arabidopsis thaliana protein match is: sorting nexin 2B (TAIR:AT5G07120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0015031
IEA
GOA Databaseprotein transport
GO:0006623
IMP
Gene Ontologyprotein targeting to vacuole1
GO:0008333
ISS
TAS
Gene Ontologyendosome to lysosome transport2 3
GO:0006896
IDA
Gene OntologyGolgi to vacuole transport3
GO:0048364
IMP
Gene Ontologyroot development4
GO:0010252
IDA
Gene Ontologyauxin homeostasis4
GO:0009958
IMP
Gene Ontologypositive gravitropism4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0035091
IEA
GOA Databasephosphatidylinositol binding
GO:0035091
IBA
Gene Ontologyphosphatidylinositol binding6
GO:0035091
IEA
InterProphosphatidylinositol binding
GO:0008289
IEA
GOA Databaselipid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0016020
IDA
Gene Ontologymembrane2
GO:0005768
IEA
GOA Databaseendosome
GO:0005768
IDA
IBA
Gene Ontologyendosome4 6
GO:0005829
IDA
GOA Databasecytosol
GO:0005737
IEA
GOA Databasecytoplasm
GO:0010008
IEA
GOA Databaseendosome membrane
GO:0005794
IEA
GOA DatabaseGolgi apparatus
GO:0005886
HDA
Gene Ontologyplasma membrane7
GO:0009507
ISM
Gene Ontologychloroplast
GO:0043231
IDA
Gene Ontologyintracellular membrane-bounded organelle2
GO:0030904
IDA
ISS
Gene Ontologyretromer complex2
GO:0005771
IDA
Gene Ontologymultivesicular body2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001683 Phox homology
IPR028648 Vacuolar protein sorting-associated protein 5-like
IPR027267 AH/BAR domain superfamily
IPR036871 PX domain superfamily
IPR015404 Sorting nexin Vps5-like, C-terminal
Mapman id Description
22.4.2.2 Vesicle trafficking.endocytic trafficking.Retromer-mediated protein recycling.regulatory factor (SNX1)