Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 1.1e-162 576.6 293 100.0
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 1.7e-107 393.3 293 70.3
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 1.9e-103 379.8 289 70.6
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 4.8e-99 365.2 314 63.1
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.2e-94 350.5 283 61.1
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 8.0e-94 347.8 276 64.9
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 2.6e-92 342.8 253 64.0
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 7.0e-90 334.7 279 59.5
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 1.6e-89 333.6 272 59.6
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 2.7e-89 332.8 262 61.8
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 3.5e-89 332.4 245 64.9
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 2.9e-88 329.3 283 58.3
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 6.6e-88 328.2 260 60.4
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.9e-87 326.6 283 59.4
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 4.3e-87 325.5 291 57.0
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 1.2e-86 323.9 281 57.3
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 1.2e-86 323.9 294 56.5
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 2.8e-86 322.8 294 56.5
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 4.7e-86 322.0 288 56.9
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 8.0e-86 321.2 284 57.0
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 1.8e-85 320.1 282 56.7
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.8e-85 320.1 280 58.6
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 2.3e-85 319.7 293 54.3
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 3.1e-85 319.3 260 62.7
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 4.0e-85 318.9 292 57.9
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 8.9e-85 317.8 281 56.2
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.2e-84 317.4 279 55.6
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.5e-84 317.0 277 60.6
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 3.4e-84 315.8 293 55.6
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 2.9e-83 312.8 273 56.4
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 3.7e-83 312.4 302 54.6
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.3e-83 311.2 276 55.8
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 1.1e-82 310.8 280 58.2
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 1.9e-82 310.1 276 55.8
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.9e-82 310.1 276 55.8
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 2.4e-82 309.7 294 54.4
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 4.1e-82 308.9 243 57.6
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 4.1e-82 308.9 291 52.9
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 4.1e-82 308.9 243 60.9
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 4.1e-82 308.9 271 55.0
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 5.4e-82 308.5 288 55.6
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 9.2e-82 307.8 278 54.7
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 1.2e-81 307.4 321 49.8
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 1.6e-81 307.0 279 55.9
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 2.7e-81 306.2 226 63.3
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.5e-81 305.8 281 55.5
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 4.6e-81 305.4 281 54.8
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.0e-81 305.1 276 54.7
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 1.7e-80 303.5 275 54.9
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 1.7e-80 303.5 289 57.1
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 3.0e-80 302.8 245 56.3
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.6e-80 301.2 293 53.2
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 8.6e-80 301.2 276 54.0
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 1.5e-79 300.4 275 54.2
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 3.3e-79 299.3 270 54.8
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 4.3e-79 298.9 285 54.4
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 4.3e-79 298.9 285 51.9
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 5.6e-79 298.5 277 53.8
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.6e-78 297.0 287 54.0
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 2.8e-78 296.2 237 57.0
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 6.2e-78 295.0 285 53.7
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 5.2e-77 292.0 263 52.5
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 2.9e-75 286.2 275 51.3
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 6.4e-75 285.0 292 52.1
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 2.4e-74 283.1 271 52.8
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 7.0e-74 281.6 288 47.6
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 9.2e-74 281.2 289 52.2
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 9.2e-74 281.2 240 58.3
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 1.2e-73 280.8 249 55.4
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 2.1e-73 280.0 288 47.6
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 3.5e-73 279.3 240 55.8
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 4.6e-73 278.9 290 47.9
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 1.7e-72 276.9 272 52.2
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 2.3e-72 276.6 274 51.5
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 3.9e-72 275.8 288 48.6
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 3.9e-72 275.8 288 48.6
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 3.9e-72 275.8 276 50.7
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 5.1e-72 275.4 276 50.7
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 5.1e-72 275.4 239 55.2
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 8.6e-72 274.6 232 56.0
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.9e-71 273.5 278 51.1
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.9e-71 273.5 278 51.1
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 4.3e-71 272.3 294 49.3
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 7.3e-71 271.6 292 48.3
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 7.3e-71 271.6 292 48.3
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 7.3e-71 271.6 292 48.3
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 9.5e-71 271.2 249 53.0
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 9.5e-71 271.2 240 56.2
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 1.2e-70 270.8 248 52.4
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 2.1e-70 270.0 313 48.9
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 2.3e-69 266.5 293 48.1
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 1.2e-68 264.2 218 61.9
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 1.2e-68 264.2 280 48.9
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 2.6e-68 263.1 262 51.5
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 1.1e-63 247.7 247 50.6
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 1.2e-62 244.2 233 50.2
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 4.0e-61 239.2 210 56.2
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.7e-59 233.8 222 55.4
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 7.1e-58 228.4 171 59.6
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 1.6e-57 227.3 312 43.9
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.1e-55 221.1 283 44.9
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 1.6e-54 217.2 406 35.2
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 1.6e-54 217.2 188 56.4
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.4e-53 214.2 270 46.3
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 6.2e-46 188.7 244 41.8
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 4.9e-43 179.1 251 42.2
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 6.9e-37 158.7 240 38.3
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 1.2e-36 157.9 135 59.3
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.4e-34 151.0 99 65.7
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.4e-34 151.0 99 65.7
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 1.8e-32 144.1 251 33.9
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 5.7e-31 139.0 253 32.4
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.4e-29 134.4 167 44.3
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 5.3e-29 132.5 167 44.3
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 2.6e-28 130.2 144 48.6
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.3e-27 127.9 96 67.7
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 3.9e-24 116.3 94 62.8
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 4.3e-23 112.8 228 30.3
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 1.4e-21 107.8 130 45.4
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 2.1e-17 94.0 248 31.5
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 6.1e-17 92.4 278 28.8
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.4e-16 91.3 229 29.7
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 1.1e-15 88.2 147 34.7
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 7.4e-15 85.5 76 57.9
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 9.1e-13 78.6 119 36.1
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 7.7e-12 75.5 57 63.2
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 2.2e-11 73.9 64 53.1
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 3.8e-11 73.2 61 55.7
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 2.7e-09 67.0 51 68.6
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 5.7e-07 59.3 44 63.6


User provided reference genes

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