Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 7.3e-127 457.2 227 100.0
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 9.9e-92 340.5 230 76.5
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.7e-91 339.7 228 75.4
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.4e-90 336.7 228 75.0
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 2.4e-85 319.3 227 70.5
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 1.3e-83 313.5 238 70.2
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 9.3e-82 307.4 229 68.6
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 7.4e-71 271.2 235 63.0
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 7.4e-71 271.2 227 62.1
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 1.2e-68 263.8 233 62.7
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.4e-68 262.3 233 60.9
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 4.5e-68 261.9 234 61.1
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 4.5e-68 261.9 227 60.4
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.0e-67 260.8 227 61.2
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.7e-67 260.0 233 60.1
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.9e-67 259.2 229 61.6
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 5.5e-66 255.0 227 60.8
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 9.3e-66 254.2 229 59.0
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 7.9e-65 251.1 246 56.5
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.3e-64 249.6 234 59.8
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 2.3e-64 249.6 234 59.8
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.9e-63 246.5 228 58.8
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 1.3e-62 243.8 230 56.1
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.6e-62 243.4 227 59.5
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 2.2e-62 243.0 237 56.1
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 3.7e-62 242.3 227 59.0
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 4.8e-62 241.9 235 57.9
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 4.8e-62 241.9 227 56.8
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 1.8e-61 240.0 209 62.2
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 2.4e-61 239.6 227 57.3
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 3.1e-61 239.2 227 58.6
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 3.1e-61 239.2 227 56.8
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 6.9e-61 238.0 227 58.6
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 6.9e-61 238.0 227 56.4
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 9.0e-61 237.7 240 55.0
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 2.0e-60 236.5 232 53.9
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 2.0e-60 236.5 242 54.1
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 2.6e-60 236.1 231 56.7
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 3.4e-60 235.7 231 58.4
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 5.9e-60 235.0 217 59.0
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 7.7e-60 234.6 230 55.2
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 7.7e-60 234.6 229 58.5
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.0e-59 234.2 228 57.5
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 1.3e-59 233.8 230 54.8
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 1.7e-59 233.4 227 56.4
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 1.7e-59 233.4 227 56.4
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 1.7e-59 233.4 235 55.7
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 1.7e-59 233.4 228 56.1
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 1.7e-59 233.4 230 55.2
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 2.9e-59 232.6 231 57.1
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.9e-59 232.6 226 56.2
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.9e-59 232.6 225 56.4
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 5.0e-59 231.9 232 53.9
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 8.5e-59 231.1 227 54.6
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 8.5e-59 231.1 227 54.6
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.1e-58 230.7 232 56.0
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 1.9e-58 229.9 238 55.0
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 4.2e-58 228.8 231 55.4
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 9.4e-58 227.6 244 53.3
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.1e-57 226.5 246 51.6
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 3.6e-57 225.7 232 52.6
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 4.6e-57 225.3 239 53.6
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 6.1e-57 224.9 227 52.9
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 7.9e-57 224.6 227 54.6
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.0e-56 224.2 249 51.8
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 1.8e-56 223.4 235 51.5
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 2.3e-56 223.0 257 50.6
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 5.1e-56 221.9 203 59.6
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 1.1e-55 220.7 227 51.5
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.5e-55 220.3 233 51.9
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 2.5e-55 219.5 158 68.4
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 2.5e-55 219.5 244 50.4
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.3e-55 219.2 255 50.2
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 4.3e-55 218.8 200 58.0
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 5.7e-55 218.4 243 50.6
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 5.7e-55 218.4 225 53.8
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 9.7e-55 217.6 232 52.6
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 9.7e-55 217.6 185 59.5
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 9.7e-55 217.6 245 50.6
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 2.2e-54 216.5 235 53.6
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 6.3e-54 214.9 233 53.2
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 1.8e-53 213.4 230 53.5
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 2.4e-53 213.0 234 53.0
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 3.1e-53 212.6 223 52.5
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 3.1e-53 212.6 232 51.7
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 4.1e-53 212.2 201 57.2
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 4.1e-53 212.2 232 53.0
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 4.1e-53 212.2 153 67.3
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 5.3e-53 211.8 219 52.5
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 5.3e-53 211.8 231 53.7
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 2.0e-52 209.9 217 53.5
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 2.0e-52 209.9 237 52.7
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 2.6e-52 209.5 217 55.8
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 3.4e-52 209.1 232 53.0
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 4.5e-52 208.8 226 50.9
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 5.9e-52 208.4 179 58.7
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 1.0e-51 207.6 211 55.0
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 1.3e-51 207.2 235 51.1
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 1.3e-51 207.2 230 51.3
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 2.2e-51 206.5 234 50.9
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 8.5e-51 204.5 193 55.4
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 1.4e-50 203.8 228 51.3
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 1.9e-50 203.4 232 51.7
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 2.5e-50 203.0 216 51.9
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 9.4e-50 201.1 227 49.8
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 1.2e-49 200.7 193 55.4
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 2.1e-49 199.9 179 57.5
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 2.7e-49 199.5 235 51.9
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 2.7e-49 199.5 154 63.6
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 8.8e-48 194.5 195 52.3
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 8.8e-48 194.5 237 48.9
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.1e-47 194.1 199 54.3
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 2.0e-47 193.4 233 49.8
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 2.0e-47 193.4 236 47.9
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 2.6e-47 193.0 251 46.2
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 3.3e-47 192.6 238 47.1
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 3.3e-47 192.6 133 70.7
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 7.4e-47 191.4 206 52.9
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.3e-46 190.7 199 53.8
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 1.3e-46 190.7 185 55.7
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 2.2e-46 189.9 238 46.6
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 4.8e-46 188.7 238 46.6
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 3.1e-45 186.0 183 57.4
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 7.0e-45 184.9 244 45.5
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 7.0e-45 184.9 217 50.2
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 7.0e-45 184.9 201 50.2
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 1.2e-44 184.1 163 55.8
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.7e-43 180.3 146 62.3
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 2.2e-43 179.9 229 46.7
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 2.5e-42 176.4 238 44.1
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 3.0e-40 169.5 251 42.2
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 6.7e-40 168.3 227 45.4
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 2.0e-39 166.8 144 59.7
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.4e-37 160.6 142 56.3
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 5.9e-36 155.2 234 42.3
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 1.0e-35 154.5 139 56.8
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.5e-34 148.7 228 41.7
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 1.6e-33 147.1 129 58.9
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 1.1e-29 134.4 230 39.6
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 4.2e-26 122.5 194 41.8
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 3.5e-20 102.8 73 65.8
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 5.9e-20 102.1 154 45.5
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 7.7e-20 101.7 226 33.6
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 2.3e-19 100.1 194 42.3
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 3.3e-18 96.3 64 67.2
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 8.9e-16 88.2 75 57.3
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 8.3e-14 81.6 54 68.5
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.8e-13 80.5 56 62.5
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 2.7e-12 76.6 88 50.0
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 4.6e-12 75.9 137 35.0
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 1.7e-11 73.9 82 51.2
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.8e-08 63.9 49 63.3
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 4.0e-08 62.8 73 42.5
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 8.9e-08 61.6 46 58.7
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.8e-07 58.9 38 63.2
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 9.8e-07 58.2 147 29.9
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 1.7e-06 57.4 94 43.6
MCO03G325 Micromonas commoda HOM05D004719 ORTHO05D005519 2.2e-06 57.0 183 32.2


User provided reference genes

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