Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 2.9e-114 415.6 268 100.0
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 6.9e-68 261.5 240 80.8
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 7.6e-67 258.1 240 79.2
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 1.1e-65 254.2 264 62.9
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 1.9e-65 253.4 241 80.9
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 1.9e-65 253.4 240 78.8
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 5.5e-65 251.9 240 78.3
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 3.5e-64 249.2 262 72.1
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 7.9e-64 248.1 241 79.3
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 1.8e-63 246.9 258 72.5
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 1.8e-63 246.9 240 76.2
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 3.0e-63 246.1 240 78.8
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 3.0e-63 246.1 240 77.1
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 1.9e-62 243.4 161 75.8
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 3.3e-62 242.7 240 75.4
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 5.7e-62 241.9 240 76.7
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 5.7e-62 241.9 240 77.9
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 9.7e-62 241.1 236 77.1
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.3e-61 240.7 240 76.7
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 1.6e-61 240.4 241 78.8
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 2.2e-61 240.0 240 76.2
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 8.2e-61 238.0 240 77.1
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 1.4e-60 237.3 240 77.1
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 1.4e-60 237.3 240 76.7
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 2.4e-60 236.5 240 75.8
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.4e-60 236.5 242 78.5
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 3.1e-60 236.1 245 75.9
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 3.1e-60 236.1 251 64.1
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 4.1e-60 235.7 242 75.2
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 4.1e-60 235.7 241 75.9
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 4.1e-60 235.7 240 76.7
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 6.9e-60 235.0 190 91.1
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 6.9e-60 235.0 218 82.1
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 9.0e-60 234.6 239 75.7
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 9.0e-60 234.6 256 72.7
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 1.2e-59 234.2 240 75.0
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 1.5e-59 233.8 240 75.8
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 2.0e-59 233.4 240 75.4
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 2.0e-59 233.4 240 77.9
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 2.0e-59 233.4 240 74.6
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 2.9e-58 229.6 241 74.3
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 6.5e-58 228.4 194 88.7
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 6.5e-58 228.4 207 84.1
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 8.5e-58 228.0 239 74.1
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.9e-57 226.9 242 76.0
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 4.2e-57 225.7 240 76.7
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 9.4e-57 224.6 240 74.6
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 9.4e-57 224.6 240 74.6
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 2.7e-56 223.0 217 78.3
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.6e-56 222.6 200 86.0
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.6e-56 222.2 199 86.4
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 6.1e-56 221.9 237 72.6
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.4e-55 220.7 240 74.2
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.4e-55 220.7 241 73.0
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 1.8e-55 220.3 195 84.6
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 1.8e-55 220.3 246 72.4
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.8e-55 220.3 259 51.0
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 3.0e-55 219.5 241 72.6
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 3.9e-55 219.2 190 86.8
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 5.1e-55 218.8 240 73.8
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 2.5e-54 216.5 246 72.0
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 3.3e-54 216.1 233 73.4
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 4.3e-54 215.7 241 72.6
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.3e-53 214.2 212 78.3
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.7e-53 213.8 243 72.8
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 2.2e-53 213.4 242 71.1
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 3.7e-53 212.6 245 71.4
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 3.7e-53 212.6 244 71.7
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 4.8e-53 212.2 241 64.3
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 4.8e-53 212.2 161 67.7
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 6.3e-53 211.8 241 73.9
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.4e-52 210.7 240 73.3
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 1.4e-52 210.7 203 79.3
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 2.4e-52 209.9 207 79.7
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.1e-52 209.5 200 67.5
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 3.1e-52 209.5 208 80.3
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 5.3e-52 208.8 240 72.1
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 1.2e-51 207.6 228 74.6
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 2.0e-51 206.8 244 72.1
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 2.6e-51 206.5 198 81.3
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 2.6e-51 206.5 244 70.5
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 4.5e-51 205.7 244 71.7
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 4.5e-51 205.7 244 70.9
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 5.9e-51 205.3 245 71.0
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.9e-50 203.0 258 50.0
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 2.9e-50 203.0 197 81.7
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 8.5e-50 201.4 189 83.6
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 2.5e-49 199.9 180 86.7
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 4.2e-49 199.1 180 87.2
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 4.7e-48 195.7 243 67.9
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 4.7e-48 195.7 214 53.3
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 4.7e-48 195.7 214 53.3
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 7.9e-48 194.9 255 65.5
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 7.9e-48 194.9 255 65.5
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 1.0e-47 194.5 245 66.5
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.8e-47 193.7 131 76.3
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.8e-47 193.7 131 76.3
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.3e-47 193.4 188 80.3
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 5.1e-47 192.2 134 73.1
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 5.1e-47 192.2 243 67.9
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.1e-47 192.2 131 76.3
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 1.1e-46 191.0 244 67.2
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-46 191.0 131 74.8
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-46 191.0 240 70.8
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 3.3e-46 189.5 255 63.9
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.3e-46 189.5 131 74.8
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 4.4e-46 189.1 242 66.9
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.4e-46 188.3 132 75.0
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 9.7e-46 188.0 243 66.7
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 9.7e-46 188.0 133 72.9
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 1.3e-45 187.6 243 66.3
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 2.2e-45 186.8 190 80.0
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 8.2e-45 184.9 184 82.1
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 5.3e-44 182.2 243 67.5
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.0e-44 181.8 240 51.2
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 1.9e-41 173.7 246 63.4
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 5.5e-41 172.2 166 86.7
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.1e-40 168.7 240 50.4
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 2.3e-39 166.8 200 70.0
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.0e-39 166.4 157 89.2
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.2e-39 165.6 158 87.3
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 2.2e-37 160.2 242 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 9.1e-36 154.8 133 60.2
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 5.0e-34 149.1 207 61.4
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 4.2e-33 146.0 156 82.1
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.2e-33 145.2 77 90.9
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 1.0e-31 141.4 126 59.5
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 8.3e-21 105.1 62 77.4
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 7.0e-12 75.5 83 48.2
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 7.0e-12 75.5 178 41.6
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 9.2e-12 75.1 115 79.1


User provided reference genes

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