Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8339 Avicennia marina HOM05D003492 ORTHO05D005115 0.0e+00 3689.8 1824 100.0
Migut.F01404 Erythranthe guttata HOM05D003492 ORTHO05D005115 0.0e+00 2993.4 1826 81.2
SGA_v2.0_scaffold365G49997 Striga asiatica HOM05D003492 ORTHO05D005115 0.0e+00 2707.9 1847 73.5
Dinv10611 Davidia involucrata HOM05D003492 ORTHO05D005115 0.0e+00 2610.5 1853 71.2
Potri.008G070300 Populus trichocarpa HOM05D003492 ORTHO05D005115 0.0e+00 2515.0 1832 68.4
GSVIVG01032797001 Vitis vinifera HOM05D003492 ORTHO05D005115 0.0e+00 2498.0 1931 66.2
Sopen06g014600 Solanum pennellii HOM05D003492 ORTHO05D005115 0.0e+00 2478.0 1822 69.2
vmacro10035 Vaccinium macrocarpon HOM05D003492 ORTHO05D005115 0.0e+00 2478.0 1941 66.0
Manes.07G131200 Manihot esculenta HOM05D003492 ORTHO05D005115 0.0e+00 2475.7 1824 67.9
QL08p063313 Quercus lobata HOM05D003492 ORTHO05D005115 0.0e+00 2471.8 1933 65.2
TWI09G0940 Tripterygium wilfordii HOM05D003492 ORTHO05D005115 0.0e+00 2462.2 1830 66.8
Gohir.D10G252000 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2461.0 1824 67.9
Gorai.011G292500 Gossypium raimondii HOM05D003492 ORTHO05D005115 0.0e+00 2456.0 1824 67.7
Nn2g10890 Nelumbo nucifera HOM05D003492 ORTHO05D005115 0.0e+00 2450.2 1830 67.0
CANSAT56G1673 Cannabis sativa HOM05D003492 ORTHO05D005115 0.0e+00 2449.1 1839 67.2
CSS0013780 Camellia sinensis var. sinensis HOM05D003492 ORTHO05D005115 0.0e+00 2448.3 1825 68.8
Prupe.2G252000 Prunus persica HOM05D003492 ORTHO05D005115 0.0e+00 2443.3 1827 67.6
Rhsim09G0177900 Rhododendron simsii HOM05D003492 ORTHO05D005115 0.0e+00 2438.3 1942 64.5
Duzib106G0351 Durio zibethinus HOM05D003492 ORTHO05D005115 0.0e+00 2430.2 1823 67.0
RcHm_v2.0_Chr1g0370461 Rosa chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2429.1 1834 67.0
Sabra08G0051700 Salix brachista HOM05D003492 ORTHO05D005115 0.0e+00 2428.7 1970 63.5
FvH4_7g24630 Fragaria vesca HOM05D003492 ORTHO05D005115 0.0e+00 2428.3 1838 66.6
Atru.chr12.67 Acer truncatum HOM05D003492 ORTHO05D005115 0.0e+00 2424.8 1829 66.9
MD07G1223400 Malus domestica HOM05D003492 ORTHO05D005115 0.0e+00 2422.5 1832 66.6
Cfa001305 Carpinus fangiana HOM05D003492 ORTHO05D005115 0.0e+00 2420.2 1792 67.6
FAN06G4945 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2414.4 1844 66.3
Lsat_1_v5_gn_2_124500 Lactuca sativa HOM05D003492 ORTHO05D005115 0.0e+00 2408.6 1840 66.6
FAN10G4174 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2401.3 1856 65.8
FAN01G1605 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 2382.1 1891 64.5
Thecc.10G014500 Theobroma cacao HOM05D003492 ORTHO05D005115 0.0e+00 2376.3 1700 70.0
Lalb_Chr04g0250511 Lupinus albus HOM05D003492 ORTHO05D005115 0.0e+00 2352.0 1821 65.1
Solyc06g048460.2 Solanum lycopersicum HOM05D003492 ORTHO05D005115 0.0e+00 2350.5 1694 70.7
TPR.G38386 Trifolium pratense HOM05D003492 ORTHO05D005115 0.0e+00 2342.8 1822 64.5
PSO339G2087 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2340.8 1827 64.4
Phvul.008G222900 Phaseolus vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2335.5 1821 64.2
Sed0003450 Sechium edule HOM05D003492 ORTHO05D005115 0.0e+00 2335.5 1827 64.3
MELO3C026794.2 Cucumis melo HOM05D003492 ORTHO05D005115 0.0e+00 2333.9 1818 64.5
HanXRQChr14g0459601 Helianthus annuus HOM05D003492 ORTHO05D005115 0.0e+00 2333.9 1832 64.6
Psat2g032000 Pisum sativum HOM05D003492 ORTHO05D005115 0.0e+00 2329.3 1836 63.9
PSO384G0172 Papaver somniferum HOM05D003492 ORTHO05D005115 0.0e+00 2328.1 1827 64.2
arahy.Tifrunner.gnm1.ann1.J7W2E5 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2324.3 1830 64.4
Glyma.02G258100 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2322.7 1830 64.3
Medtr5g082890 Medicago truncatula HOM05D003492 ORTHO05D005115 0.0e+00 2322.7 1822 64.1
LjContig00357g0011776 Lotus japonicus HOM05D003492 ORTHO05D005115 0.0e+00 2322.4 1821 64.0
Ca_05974_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 0.0e+00 2322.0 1820 63.7
CsaV3_5G010260 Cucumis sativus L. HOM05D003492 ORTHO05D005115 0.0e+00 2322.0 1816 64.1
ClCG07G004320 Citrullus lanatus HOM05D003492 ORTHO05D005115 0.0e+00 2317.0 1816 64.2
Haze_17240 Corylus avellana HOM05D003492 ORTHO05D005115 0.0e+00 2312.3 1890 63.1
Aqoxy4G02502 Aquilegia oxysepala HOM05D003492 ORTHO05D005115 0.0e+00 2310.4 1827 64.1
ECA238G3428 Erigeron canadensis HOM05D003492 ORTHO05D005115 0.0e+00 2308.1 1834 64.2
arahy.Tifrunner.gnm1.ann1.V2YUX7 Arachis hypogaea HOM05D003492 ORTHO05D005115 0.0e+00 2305.8 1870 63.2
VMungo0647G1152 Vigna mungo HOM05D003492 ORTHO05D005115 0.0e+00 2274.6 1819 63.2
Eucgr.G03070 Eucalyptus grandis HOM05D003492 ORTHO05D005115 0.0e+00 2266.5 1726 65.8
Glyma.14G058400 Glycine max HOM05D003492 ORTHO05D005115 0.0e+00 2266.5 1824 62.7
Sc11g0005130 Simmondsia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 2263.4 1821 63.5
DCAR_011823 Daucus carota HOM05D003492 ORTHO05D005115 0.0e+00 2257.6 1726 67.0
AUR62012268 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2221.4 1819 62.5
THA.LOC104816541 Tarenaya hassleriana HOM05D003492 ORTHO05D005115 0.0e+00 2207.9 1829 61.8
PGR142G1812 Punica granatum HOM05D003492 ORTHO05D005115 0.0e+00 2191.0 1823 61.8
AUR62022903 Chenopodium quinoa HOM05D003492 ORTHO05D005115 0.0e+00 2171.7 1830 61.7
Sp6g37310 Schrenkiella parvula HOM05D003492 ORTHO05D005115 0.0e+00 2169.4 1832 61.2
AL6G15450 Arabidopsis lyrata HOM05D003492 ORTHO05D005115 0.0e+00 2166.0 1826 60.8
Gohir.A10G240100 Gossypium hirsutum HOM05D003492 ORTHO05D005115 0.0e+00 2165.2 1593 68.2
BcaB01g05759 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2163.7 1833 60.3
AT5G05560 Arabidopsis thaliana HOM05D003492 ORTHO05D005115 0.0e+00 2159.8 1826 60.7
Carub.0006s0446 Capsella rubella HOM05D003492 ORTHO05D005115 0.0e+00 2159.0 1833 60.2
EL10Ac2g04850 Beta vulgaris HOM05D003492 ORTHO05D005115 0.0e+00 2152.5 1938 58.5
C02p02390 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2134.4 1839 60.1
Nitab4.5_0000797g0050 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 2134.0 1772 63.9
BraA03t09597Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2128.6 1839 59.7
CARHR207700 Cardamine hirsuta HOM05D003492 ORTHO05D005115 0.0e+00 2116.3 1827 60.2
BcaB01g05953 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 2114.0 1829 59.5
A03p02330 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2102.0 1839 59.2
C03p02660 Brassica napus HOM05D003492 ORTHO05D005115 0.0e+00 2101.6 1854 59.3
BraA02t04853Z Brassica rapa HOM05D003492 ORTHO05D005115 0.0e+00 2092.4 1865 58.9
BolC2t06204H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2085.1 1857 58.8
Aa31LG11G6620 Aethionema arabicum HOM05D003492 ORTHO05D005115 0.0e+00 2081.2 1853 58.4
BolC3t12820H Brassica oleracea HOM05D003492 ORTHO05D005115 0.0e+00 2080.4 1865 58.6
ATR0681G383 Amborella trichopoda HOM05D003492 ORTHO05D005115 0.0e+00 2070.8 1835 58.0
Cpa.g.sc19.161 Carica papaya HOM05D003492 ORTHO05D005115 0.0e+00 2015.0 1860 57.7
Ah.16g103640 Amaranthus hybridus HOM05D003492 ORTHO05D005115 0.0e+00 2002.6 1834 57.9
Ciclev10030498m.g Citrus clementina HOM05D003492 ORTHO05D005115 0.0e+00 1983.8 1447 68.3
unitig_60.g25675 Utricularia gibba HOM05D003492 ORTHO05D005115 0.0e+00 1983.0 1872 57.6
Thhalv10012420m.g Eutrema salsugineum HOM05D003492 ORTHO05D005115 0.0e+00 1956.4 1844 56.1
TAR623G0495 Trochodendron aralioides HOM05D003492 ORTHO05D005115 0.0e+00 1889.0 1477 65.3
Oeu049666.1 Olea europaea HOM05D003492 ORTHO05D005115 0.0e+00 1867.4 1408 68.4
BcaB05g21711 Brassica carinata HOM05D003492 ORTHO05D005115 0.0e+00 1753.4 1520 59.7
Cc02_g06280 Coffea canephora HOM05D003492 ORTHO05D005115 0.0e+00 1744.2 1326 66.8
FAN03G1412 Fragaria x ananassa HOM05D003492 ORTHO05D005115 0.0e+00 1670.2 1211 69.1
Hund15919 Selenicereus undatus HOM05D003492 ORTHO05D005115 0.0e+00 1669.1 1223 68.7
Pp3c11_19460 Physcomitrium patens HOM05D003492 ORTHO05D005115 0.0e+00 1499.2 1936 43.8
CiPaw.01G300000 Carya illinoinensis HOM05D003492 ORTHO05D005115 0.0e+00 1459.5 973 74.8
Mapoly0044s0071 Marchantia polymorpha HOM05D003492 ORTHO05D005115 0.0e+00 1449.1 1931 43.5
AagrBONN_evm.TU.Sc2ySwM_344.5492 Anthoceros agrestis HOM05D003492 ORTHO05D005115 0.0e+00 1433.3 1775 44.3
Actinidia13945 Actinidia chinensis HOM05D003492 ORTHO05D005115 0.0e+00 1385.2 1054 67.5
Nitab4.5_0011089g0010 Nicotiana tabacum HOM05D003492 ORTHO05D005115 0.0e+00 1379.4 1350 56.7
Zm00001eb286110 Zea mays HOM05D003492 ORTHO05D005115 0.0e+00 1194.5 1214 52.1
Os05g0354300 Oryza sativa ssp. japonica HOM05D003492 ORTHO05D005115 0.0e+00 1181.4 941 62.5
SMO331G0080 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 0.0e+00 1179.9 1818 39.7
Peaxi162Scf00284g00913 Petunia axillaris HOM05D003492 ORTHO05D005115 0.0e+00 1177.2 782 74.7
MBI15_g19421_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 0.0e+00 1162.9 1155 54.4
HPP92_012039 Vanilla planifolia HOM05D003492 ORTHO05D005115 0.0e+00 1122.5 907 62.7
Lj8C65G6 Lonicera japonica HOM05D003492 ORTHO05D005115 0.0e+00 1113.2 918 64.9
Peaxi162Scf00284g00912 Petunia axillaris HOM05D003492 ORTHO05D005115 3.3e-302 1042.7 911 61.0
CBR_g22845 Chara braunii HOM05D003492 ORTHO05D005115 2.9e-295 1019.6 2149 34.3
CAN.G78.68 Capsicum annuum HOM05D003492 ORTHO05D005115 1.8e-276 957.2 814 62.5
SMO105G0008 Selaginella moellendorffii HOM05D003492 ORTHO05D005115 1.5e-222 778.1 826 50.4
CAN.G1193.3 Capsicum annuum HOM05D003492 ORTHO05D005115 1.2e-219 768.5 513 73.7
CDE12G0911 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 6.1e-216 756.1 723 54.4
Actinidia13944 Actinidia chinensis HOM05D003492 ORTHO05D005115 3.9e-215 753.4 523 70.6
CiPaw.01G300100 Carya illinoinensis HOM05D003492 ORTHO05D005115 1.3e-205 721.8 637 59.5
FAN03G1608 Fragaria x ananassa HOM05D003492 ORTHO05D005115 1.5e-193 681.8 628 57.2
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.3e-181 642.1 871 46.6
Rhsim10G0095300 Rhododendron simsii HOM05D003492 ORTHO05D005115 7.0e-180 636.3 565 61.1
SEGI_27844 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 3.5e-179 634.0 523 59.7
CDE12G0028 Ceratophyllum demersum HOM05D003492 ORTHO05D005115 3.5e-171 607.4 1077 37.0
MCO04G065 Micromonas commoda HOM05D003492 ORTHO05D005115 1.1e-169 602.4 891 40.7
SalBow5G5368 Salvia bowleyana HOM05D003492 ORTHO05D005115 3.6e-160 570.9 373 75.3
SHI03328 Sapria himalayana HOM05D003492 ORTHO05D005115 1.2e-158 565.8 387 69.8
Cc02_g06300 Coffea canephora HOM05D003492 ORTHO05D005115 9.2e-156 556.2 399 67.7
SEGI_00595 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 4.6e-155 553.9 735 44.6
SHI03332 Sapria himalayana HOM05D003492 ORTHO05D005115 1.5e-145 522.3 433 61.4
CAN.G1782.1 Capsicum annuum HOM05D003492 ORTHO05D005115 7.6e-142 510.0 439 62.4
CAN.G78.71 Capsicum annuum HOM05D003492 ORTHO05D005115 2.3e-138 498.4 321 76.3
Hund29345 Selenicereus undatus HOM05D003492 ORTHO05D005115 4.0e-127 461.1 536 49.1
Hund28567 Selenicereus undatus HOM05D003492 ORTHO05D005115 9.6e-121 439.9 548 47.3
Lj8A65G43 Lonicera japonica HOM05D003492 ORTHO05D005115 2.7e-115 421.8 309 69.9
TAR623G0911 Trochodendron aralioides HOM05D003492 ORTHO05D005115 2.4e-111 408.7 311 64.3
Nitab4.5_0011089g0020 Nicotiana tabacum HOM05D003492 ORTHO05D005115 6.9e-111 407.1 394 58.9
Actinidia35642 Actinidia chinensis HOM05D003492 ORTHO05D005115 2.9e-109 401.7 387 59.4
Cre13.g579100 Chlamydomonas reinhardtii HOM05D003492 ORTHO05D005115 3.6e-107 394.8 847 34.5
HPP92_012038 Vanilla planifolia HOM05D003492 ORTHO05D005115 4.1e-103 381.3 374 54.5
Hma1.2p1_0235F.1_g098570 Hydrangea macrophylla HOM05D003492 ORTHO05D005115 2.9e-101 375.2 338 57.7
Gorai.011G292700 Gossypium raimondii HOM05D003492 ORTHO05D005115 9.1e-95 353.6 253 70.4
Ca_30996_v3 Cicer arietinum L. HOM05D003492 ORTHO05D005115 4.7e-91 341.3 309 56.0
CAN.G78.70 Capsicum annuum HOM05D003492 ORTHO05D005115 3.1e-87 328.6 186 86.0
Cfa022850 Carpinus fangiana HOM05D003492 ORTHO05D005115 2.2e-85 322.4 827 30.1
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 3.4e-73 282.0 421 41.6
Lj8A65T41 Lonicera japonica HOM05D003492 ORTHO05D005115 6.4e-56 224.6 164 67.1
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 2.0e-54 219.5 341 39.9
HPP92_012036 Vanilla planifolia HOM05D003492 ORTHO05D005115 1.6e-46 193.4 229 44.1
Lsat_1_v5_gn_2_57160 Lactuca sativa HOM05D003492 ORTHO05D022499 8.9e-42 177.6 227 42.3
Thhalv10015394m.g Eutrema salsugineum HOM05D003492 ORTHO05D035223 9.2e-39 167.5 157 56.7
Cc02_g06290 Coffea canephora HOM05D003492 ORTHO05D005115 2.7e-38 166.0 101 78.2
CAN.G78.73 Capsicum annuum HOM05D003492 ORTHO05D005115 2.3e-37 162.9 300 37.3
Psat1g148680 Pisum sativum HOM05D003492 ORTHO05D024801 3.3e-36 159.1 132 59.8
CAN.G78.72 Capsicum annuum HOM05D003492 ORTHO05D019467 6.8e-34 151.4 164 45.7
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 6.8e-34 151.4 183 47.5
Duzib114G0096 Durio zibethinus HOM05D003492 ORTHO05D005115 4.4e-33 148.7 123 61.8
SEGI_03313 Sequoiadendron giganteum HOM05D003492 ORTHO05D005115 4.4e-33 148.7 213 40.4
MBI08_g18764_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D005115 1.4e-31 143.7 169 46.2
Lsat_1_v5_gn_1_82880 Lactuca sativa HOM05D003492 ORTHO05D005115 1.9e-31 143.3 109 67.9
Lsat_1_v5_gn_4_75100 Lactuca sativa HOM05D003492 ORTHO05D016080 5.4e-31 141.7 120 58.3
Rhsim10G0095400 Rhododendron simsii HOM05D003492 ORTHO05D005115 7.1e-31 141.4 103 66.0
Psat2g065680 Pisum sativum HOM05D003492 ORTHO05D005115 6.0e-30 138.3 119 53.8
Lj8C65T9 Lonicera japonica HOM05D003492 ORTHO05D019467 5.1e-29 135.2 130 55.4
SEGI_23081 Sequoiadendron giganteum HOM05D003492 ORTHO05D019467 5.6e-28 131.7 198 36.4
SHI03327 Sapria himalayana HOM05D003492 ORTHO05D000001 1.3e-27 130.6 444 24.8
HPP92_012037 Vanilla planifolia HOM05D003492 ORTHO05D005115 2.1e-27 129.8 154 47.4
SHI03333 Sapria himalayana HOM05D003492 ORTHO05D005115 6.2e-27 128.3 164 43.9
CAN.G1193.2 Capsicum annuum HOM05D003492 ORTHO05D019467 4.4e-25 122.1 131 45.0
SHI03336 Sapria himalayana HOM05D003492 ORTHO05D005115 4.4e-25 122.1 131 50.4
Actinidia00955 Actinidia chinensis HOM05D003492 ORTHO05D019467 2.9e-24 119.4 107 57.0
MBI12_g24829_MAGBIO Magnolia biondii HOM05D003492 ORTHO05D011152 2.9e-24 119.4 165 39.4
Lsat_1_v5_gn_9_80501 Lactuca sativa HOM05D003662 ORTHO05D001824 6.0e-22 111.7 144 47.9
BcaB01g05927 Brassica carinata HOM05D003492 ORTHO05D016080 1.3e-21 110.5 124 50.0
Actinidia03517 Actinidia chinensis HOM05D003492 ORTHO05D005115 1.6e-19 103.6 53 84.9
Psat4g081200 Pisum sativum HOM05D003492 ORTHO05D000696 1.4e-18 100.5 101 50.5
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 5.3e-18 98.6 81 56.8
Psat7g097320 Pisum sativum HOM05D003492 ORTHO05D024801 4.5e-17 95.5 100 53.0
Lsat_1_v5_gn_7_99341 Lactuca sativa HOM05D003492 ORTHO05D016080 5.8e-17 95.1 87 52.9
SHI03335 Sapria himalayana HOM05D003492 ORTHO05D005115 8.4e-16 91.3 86 53.5
CAN.G78.69 Capsicum annuum HOM05D003492 ORTHO05D024801 1.1e-15 90.9 71 69.0
DCAR_011824 Daucus carota HOM05D003492 ORTHO05D005115 9.3e-15 87.8 76 60.5
Lj8A65T40 Lonicera japonica HOM05D003492 ORTHO05D005115 1.6e-14 87.0 72 65.3
GSVIVG01034775001 Vitis vinifera HOM05D003492 ORTHO05D035223 1.1e-10 74.3 58 69.0
CAN.G3101.1 Capsicum annuum HOM05D003492 ORTHO05D005115 2.6e-09 69.7 71 50.7
Actinidia02211 Actinidia chinensis HOM05D003492 ORTHO05D005115 4.5e-09 68.9 86 44.2
HanXRQChr15g0464841 Helianthus annuus HOM05D003492 ORTHO05D005115 2.9e-08 66.2 75 50.7
SHI03338 Sapria himalayana HOM05D003492 ORTHO05D005115 9.3e-07 61.2 69 44.9
MBI18_g01105_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 2.7e-06 59.7 61 54.1
Potri.010G187201 Populus trichocarpa HOM05D003492 ORTHO05D019467 2.7e-06 59.7 68 44.1
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 3.5e-06 59.3 44 54.5


User provided reference genes

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