Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 2.4e-202 708.8 394 100.0
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 3.2e-178 628.6 394 88.3
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.5e-175 619.8 417 83.7
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 3.1e-173 612.1 394 85.3
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 9.2e-170 600.5 394 84.3
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 8.6e-168 594.0 394 83.2
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 5.8e-164 581.3 394 81.5
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 6.4e-163 577.8 394 82.2
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 2.4e-162 575.9 394 82.2
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 5.4e-162 574.7 394 81.0
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 3.5e-161 572.0 394 82.0
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 3.5e-161 572.0 394 81.2
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.3e-160 570.1 394 80.5
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 3.9e-160 568.5 394 80.7
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 5.1e-160 568.2 392 80.1
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 1.9e-159 566.2 394 79.9
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 4.3e-159 565.1 394 77.9
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 5.6e-159 564.7 394 77.4
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.6e-158 563.1 394 80.2
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 8.1e-158 560.8 394 78.9
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 1.1e-157 560.5 394 78.4
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.8e-157 559.7 394 78.4
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.8e-157 559.7 394 78.4
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 9.0e-157 557.4 402 79.1
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 9.0e-157 557.4 438 73.1
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.0e-156 556.2 394 77.9
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.0e-156 556.2 394 77.9
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 2.6e-156 555.8 394 79.2
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 3.4e-156 555.4 392 78.3
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.4e-156 555.4 392 77.3
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 5.8e-156 554.7 394 77.7
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 5.8e-156 554.7 392 76.8
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 5.8e-156 554.7 392 77.3
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 7.6e-156 554.3 392 79.3
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 9.9e-156 553.9 392 77.3
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 4.9e-155 551.6 392 79.1
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 6.4e-155 551.2 392 77.0
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 8.4e-155 550.8 392 78.1
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 8.4e-155 550.8 392 78.6
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 4.2e-154 548.5 409 76.5
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 6.0e-153 544.7 395 77.5
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 7.8e-153 544.3 395 78.2
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 1.0e-152 543.9 392 77.3
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 1.0e-152 543.9 392 77.8
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 1.3e-152 543.5 392 77.0
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 3.0e-152 542.3 392 75.3
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 1.1e-151 540.4 392 75.5
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 4.3e-151 538.5 394 70.6
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 7.3e-151 537.7 394 70.3
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 9.6e-151 537.3 392 74.2
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 4.8e-150 535.0 392 72.7
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 1.4e-149 533.5 392 72.4
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 1.8e-149 533.1 394 69.5
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 2.4e-149 532.7 387 80.1
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 5.3e-149 531.6 397 70.8
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 2.0e-148 529.6 394 69.3
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 2.6e-148 529.3 392 77.3
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 9.9e-148 527.3 394 69.0
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 1.3e-147 526.9 395 75.4
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 1.7e-147 526.6 394 74.1
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 4.2e-146 521.9 394 70.3
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 7.1e-146 521.2 398 77.1
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 7.1e-146 521.2 392 74.7
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 9.3e-146 520.8 392 70.4
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.2e-145 520.4 398 77.1
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 1.3e-144 516.9 394 68.5
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.8e-144 516.5 394 68.8
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 2.3e-144 516.2 376 74.5
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 3.9e-144 515.4 393 74.0
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 5.1e-144 515.0 393 74.6
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 6.7e-144 514.6 370 78.1
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 8.7e-144 514.2 394 76.1
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 1.1e-143 513.8 394 68.3
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 1.1e-143 513.8 394 68.3
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 4.3e-143 511.9 399 67.9
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 9.6e-143 510.8 394 74.6
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.6e-142 510.0 392 65.8
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 1.6e-142 510.0 392 74.5
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 3.7e-142 508.8 394 74.4
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.4e-141 506.9 370 77.6
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.4e-141 506.9 394 74.6
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-141 506.5 394 65.2
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 1.8e-141 506.5 394 74.4
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.5e-140 503.4 394 74.6
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 1.6e-137 493.4 426 69.0
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 2.1e-137 493.0 378 67.7
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 6.7e-136 488.0 394 72.6
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 1.5e-135 486.9 414 70.0
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 4.5e-132 475.3 403 69.7
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 7.6e-132 474.6 395 70.1
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 2.9e-131 472.6 398 69.1
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 2.5e-130 469.5 394 72.8
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 3.3e-127 459.1 406 62.1
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 8.2e-126 454.5 356 68.0
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 1.0e-123 447.6 394 60.9
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 2.7e-121 439.5 372 70.7
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 5.5e-114 415.2 392 56.1
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 1.1e-109 401.0 378 59.8
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 3.2e-106 389.4 292 70.2
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 5.3e-101 372.1 394 54.1
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 2.4e-93 346.7 283 73.9
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 3.1e-93 346.3 399 51.4
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 1.6e-89 334.0 392 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 2.1e-89 333.6 399 48.9
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 8.8e-88 328.2 328 64.3
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 2.0e-87 327.0 246 67.1
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 5.7e-79 298.9 302 57.3
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.6e-73 280.8 378 46.6
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 2.4e-69 266.9 302 52.3
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 2.4e-69 266.9 390 52.3
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 1.9e-66 257.3 182 70.3
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 3.3e-66 256.5 292 54.1
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 5.6e-66 255.8 182 69.8
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 6.8e-56 222.2 540 33.1
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 3.5e-52 209.9 424 34.0
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.8e-48 197.6 153 71.2
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 2.4e-48 197.2 122 79.5
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 2.4e-45 187.2 165 58.8
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 5.4e-45 186.0 125 76.8
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 2.5e-42 177.2 415 34.0
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 2.1e-41 174.1 205 50.7
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 4.0e-40 169.9 165 55.8
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 1.7e-38 164.5 391 32.0
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 9.3e-37 158.7 92 85.9
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 2.0e-31 141.0 136 55.9
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 7.6e-31 139.0 69 87.0
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 1.2e-28 131.7 88 79.5
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 6.0e-28 129.4 125 62.4
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 3.3e-26 123.6 81 74.1
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 4.3e-26 123.2 150 47.3
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 5.6e-26 122.9 88 70.5
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 2.8e-25 120.6 141 50.4
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 5.8e-23 112.8 104 58.7
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 4.9e-22 109.8 148 41.9
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 5.5e-21 106.3 130 61.5
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 4.8e-17 93.2 50 76.0
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.2e-15 88.6 46 95.7
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 3.8e-14 83.6 80 60.0
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 8.4e-14 82.4 48 66.7
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 1.6e-12 78.2 51 76.5
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 2.7e-12 77.4 120 40.8
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 8.7e-11 72.4 41 78.0
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 4.3e-10 70.1 38 89.5
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.4e-10 69.3 57 54.4
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 1.3e-09 68.6 44 77.3
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 4.8e-09 66.6 35 88.6


User provided reference genes

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