Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 3.4e-275 951.0 478 100.0
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 3.6e-200 701.8 480 72.5
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 8.0e-192 674.1 480 70.6
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 3.1e-188 662.1 485 68.7
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 2.7e-184 649.0 516 66.5
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 4.2e-177 625.2 433 74.1
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 5.5e-177 624.8 442 71.0
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 4.7e-176 621.7 481 65.1
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 4.0e-175 618.6 431 71.0
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 8.8e-175 617.5 481 64.4
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 2.0e-174 616.3 389 76.9
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 2.8e-173 612.5 398 75.4
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 4.9e-173 611.7 481 64.0
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 8.3e-173 610.9 482 65.1
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 2.4e-172 609.4 468 66.7
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 5.4e-172 608.2 487 65.3
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 2.0e-171 606.3 359 80.8
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 2.7e-171 605.9 371 78.4
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 3.5e-171 605.5 432 71.1
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 7.7e-171 604.4 481 64.7
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.0e-170 604.0 481 63.2
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 1.7e-170 603.2 491 64.6
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 1.7e-170 603.2 481 64.4
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 2.3e-170 602.8 382 75.9
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 6.6e-170 601.3 370 78.6
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 8.6e-170 600.9 484 65.5
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.5e-169 600.1 483 66.5
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.5e-169 600.1 483 66.3
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.9e-169 599.7 482 63.1
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 1.9e-169 599.7 390 73.8
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 9.5e-169 597.4 408 72.3
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 1.6e-168 596.7 370 78.9
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 2.1e-168 596.3 382 74.9
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 2.1e-168 596.3 482 63.7
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 4.7e-168 595.1 480 65.4
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 6.1e-168 594.7 359 77.7
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 4.0e-167 592.0 409 73.3
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 5.2e-167 591.7 363 80.7
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 1.2e-166 590.5 363 79.3
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 1.2e-166 590.5 378 74.1
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.5e-166 590.1 363 80.4
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 2.0e-166 589.7 364 79.9
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 2.6e-166 589.3 369 76.2
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.6e-166 589.3 363 80.2
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 2.6e-166 589.3 488 63.5
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 2.6e-166 589.3 488 63.5
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 7.5e-166 587.8 369 75.9
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 7.5e-166 587.8 363 79.6
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 7.5e-166 587.8 359 77.4
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.3e-165 587.0 390 74.4
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 1.3e-165 587.0 387 74.2
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 1.3e-165 587.0 363 78.2
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 1.7e-165 586.6 495 60.4
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 4.9e-165 585.1 383 75.7
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 6.4e-165 584.7 486 61.5
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.1e-164 583.9 359 78.0
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 1.4e-164 583.6 371 75.7
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.4e-164 582.8 486 61.1
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.6e-163 580.1 446 63.7
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.5e-163 578.9 454 63.4
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 4.6e-163 578.6 371 74.9
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 4.6e-163 578.6 396 72.0
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 5.9e-163 578.2 380 74.2
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 7.8e-163 577.8 454 63.2
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 1.0e-162 577.4 477 61.0
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 3.0e-162 575.9 380 73.9
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 3.0e-162 575.9 490 60.0
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 3.0e-162 575.9 375 74.4
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 1.5e-161 573.5 385 73.5
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 1.9e-161 573.2 396 73.0
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 3.3e-161 572.4 483 61.5
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 5.6e-161 571.6 364 78.3
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 9.5e-161 570.9 371 77.4
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 3.6e-160 568.9 376 73.1
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 3.1e-159 565.8 370 73.0
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 5.2e-159 565.1 364 77.7
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 5.2e-159 565.1 464 63.6
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 8.9e-159 564.3 373 73.2
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 2.6e-158 562.8 366 76.8
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 3.4e-158 562.4 363 76.9
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 8.3e-157 557.8 452 63.9
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 5.4e-156 555.1 363 77.1
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 9.2e-156 554.3 519 57.2
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 1.3e-154 550.4 444 64.0
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 3.0e-154 549.3 382 72.3
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 3.9e-154 548.9 408 67.9
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.5e-153 547.0 371 72.2
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 8.1e-152 541.2 373 71.6
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 3.4e-150 535.8 478 61.9
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 4.9e-149 531.9 379 72.6
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 3.2e-148 529.3 303 81.2
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 4.1e-148 528.9 389 69.7
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 1.2e-147 527.3 330 76.1
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 2.1e-147 526.6 330 75.8
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 5.1e-146 521.9 373 67.8
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 3.6e-144 515.8 572 50.0
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 8.4e-141 504.6 448 59.6
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.4e-140 503.8 363 66.9
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 1.1e-135 487.6 361 64.3
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 8.9e-135 484.6 264 84.5
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 8.4e-133 478.0 362 65.5
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.0e-122 443.0 335 64.2
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 9.6e-121 438.0 454 53.7
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 4.5e-118 429.1 357 58.0
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 3.7e-112 409.5 260 73.5
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 8.7e-106 388.3 292 61.0
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 6.1e-99 365.5 313 60.1
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 5.1e-98 362.5 243 72.4
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 2.0e-94 350.5 244 68.4
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 5.1e-90 335.9 369 53.9
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.5e-76 290.4 228 61.4
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 3.8e-69 266.5 303 45.2
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.1e-68 265.0 204 56.9
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.1e-68 265.0 204 56.9
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 1.2e-67 261.5 300 43.3
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.1e-67 260.8 204 56.4
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.7e-67 259.6 204 55.4
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.7e-54 217.2 210 53.8
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 1.4e-39 168.3 141 66.0
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.8e-34 151.4 98 64.3
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 3.9e-13 80.5 93 51.6
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 2.1e-11 74.7 326 23.0
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 9.0e-10 69.3 292 21.2
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 9.0e-10 69.3 292 21.2
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 1.2e-09 68.9 295 21.7
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.2e-09 68.9 299 21.7
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 1.5e-09 68.6 89 46.1
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 1.5e-09 68.6 292 21.2
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.5e-09 68.6 351 23.1
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 2.0e-09 68.2 278 22.3
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 5.8e-09 66.6 302 20.9
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 9.9e-09 65.9 302 20.9
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 3.8e-08 63.9 301 22.6
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 4.9e-08 63.5 301 21.6
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.1e-07 62.4 281 21.7
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 1.9e-07 61.6 160 21.9
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 3.2e-07 60.8 266 21.8
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 3.2e-07 60.8 309 23.3
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 5.4e-07 60.1 132 25.8
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 9.3e-07 59.3 293 21.5
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 1.2e-06 58.9 269 20.8
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 1.6e-06 58.5 289 21.1
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 2.1e-06 58.2 286 21.3
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 3.5e-06 57.4 135 24.4
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 3.5e-06 57.4 134 21.6
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 7.9e-06 56.2 303 20.1


User provided reference genes

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