Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 0.0e+00 1287.7 649 100.0
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 4.3e-289 997.7 646 76.9
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 2.2e-285 985.3 645 76.1
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.2e-270 936.4 647 72.2
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 1.7e-261 906.0 653 68.5
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 2.2e-261 905.6 657 69.3
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 4.9e-261 904.4 653 68.5
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.1e-260 903.3 653 68.5
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.2e-254 883.2 655 67.8
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 1.3e-250 869.8 648 67.0
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 3.9e-250 868.2 656 67.2
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 5.1e-250 867.8 624 69.2
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 8.7e-250 867.1 660 65.6
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 3.7e-248 861.7 658 65.3
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 3.4e-246 855.1 654 65.9
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 1.9e-244 849.4 659 64.3
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 2.5e-244 849.0 651 63.6
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 4.2e-244 848.2 659 65.9
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 1.2e-243 846.7 659 64.8
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 1.6e-240 836.3 647 64.8
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 9.0e-239 830.5 658 64.0
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 3.4e-238 828.6 650 65.1
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 7.6e-238 827.4 650 64.0
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 5.0e-237 824.7 680 62.2
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 8.4e-237 823.9 656 63.1
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 4.2e-236 821.6 657 63.9
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 5.5e-236 821.2 658 64.0
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 9.3e-236 820.5 666 61.6
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 3.0e-234 815.5 649 63.0
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 3.0e-234 815.5 658 62.3
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.9e-233 812.8 643 63.9
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.9e-233 812.8 649 62.6
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 5.7e-233 811.2 649 62.6
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 9.7e-233 810.4 658 62.3
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 9.7e-233 810.4 658 62.2
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 2.2e-229 799.3 656 61.4
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 5.0e-229 798.1 660 61.8
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 1.9e-228 796.2 658 60.9
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 7.2e-228 794.3 660 61.8
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 9.4e-228 793.9 659 61.8
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 1.6e-227 793.1 656 60.8
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 3.6e-227 792.0 660 61.5
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 7.9e-227 790.8 654 61.8
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 3.0e-226 788.9 660 61.2
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 5.1e-226 788.1 656 61.3
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 5.7e-225 784.6 658 60.6
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 9.7e-225 783.9 662 61.2
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 2.8e-224 782.3 644 61.2
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 3.7e-224 781.9 643 62.7
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.4e-223 780.0 662 60.6
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 6.9e-223 777.7 660 59.8
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 5.9e-222 774.6 658 60.2
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.0e-221 773.9 655 59.7
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.3e-221 773.5 658 60.3
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 1.7e-221 773.1 651 59.9
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.2e-221 772.7 659 59.5
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.1e-220 770.4 644 59.9
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 4.2e-220 768.5 656 60.1
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 5.5e-220 768.1 668 59.3
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 3.6e-219 765.4 643 59.4
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 6.1e-219 764.6 658 59.7
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 7.9e-219 764.2 656 59.0
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.8e-218 763.1 658 59.7
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 2.3e-218 762.7 655 59.5
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 2.3e-218 762.7 665 58.6
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 2.0e-217 759.6 642 59.5
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.6e-217 759.2 645 60.6
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.3e-216 756.9 642 59.3
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 2.2e-216 756.1 649 59.3
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 2.8e-216 755.7 642 59.2
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.7e-216 755.4 655 58.5
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 6.3e-216 754.6 658 59.0
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 8.2e-216 754.2 655 58.3
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 3.1e-215 752.3 671 56.8
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 5.3e-215 751.5 655 57.4
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 2.9e-213 745.7 646 58.8
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 2.9e-213 745.7 646 58.8
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 3.8e-213 745.3 658 57.6
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 5.2e-210 734.9 657 57.5
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 2.0e-209 733.0 646 60.5
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.6e-209 732.6 645 58.1
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 3.1e-207 725.7 643 57.7
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 9.1e-207 724.2 656 56.9
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 1.0e-205 720.7 657 56.2
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 3.6e-203 712.2 662 55.3
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.7e-203 711.8 654 54.7
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 2.3e-202 709.5 653 54.4
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 5.4e-199 698.4 654 57.0
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 8.5e-197 691.0 643 55.4
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 7.2e-196 688.0 647 55.2
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 1.6e-195 686.8 656 54.4
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 6.8e-194 681.4 665 53.1
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.5e-193 680.2 653 52.5
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.8e-186 656.8 493 66.3
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 8.9e-186 654.4 687 49.9
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 3.9e-181 639.0 509 63.5
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 9.5e-180 634.4 646 51.7
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.0e-177 626.7 654 50.2
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 3.2e-175 619.4 658 50.5
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 5.4e-167 592.0 471 62.4
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 5.2e-162 575.5 610 53.1
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 2.9e-144 516.5 415 62.7
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.8e-138 497.3 520 49.2
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.6e-134 484.2 332 71.1
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 4.6e-126 456.1 381 60.9
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 6.9e-122 442.2 664 39.8
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.3e-107 394.8 641 36.5
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.2e-105 388.3 655 36.8
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 5.7e-92 342.8 505 39.4
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 1.2e-84 318.5 359 47.1
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 1.4e-82 311.6 272 56.6
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.6e-78 298.1 285 52.3
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 3.8e-72 276.9 752 27.9
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 5.0e-72 276.6 268 54.5
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 4.7e-62 243.4 702 27.4
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 4.9e-59 233.4 362 37.3
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 6.6e-56 223.0 181 60.2
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.2e-44 185.7 210 49.5
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 2.7e-33 147.9 127 59.1
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 7.6e-28 129.8 81 70.4
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.9e-26 125.2 239 31.8
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 7.9e-25 119.8 88 69.3
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 3.0e-24 117.9 206 33.0
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 8.7e-24 116.3 101 49.5
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 4.3e-23 114.0 76 73.7
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.1e-22 111.7 76 72.4
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.4e-21 108.2 86 50.0
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 2.0e-20 105.1 295 28.8
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.7e-19 102.1 62 82.3
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.1e-18 99.4 166 38.6
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 1.0e-16 92.8 108 45.4
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.5e-15 88.2 88 53.4
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.6e-14 85.5 90 46.7
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 2.8e-14 84.7 98 45.9
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 9.3e-10 69.7 76 47.4
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 8.2e-06 56.6 41 75.6


User provided reference genes

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