Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 0.0e+00 1199.9 690 100.0
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 7.6e-252 874.0 762 71.9
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 5.4e-250 867.8 746 73.1
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 6.9e-245 850.9 770 68.8
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.5e-239 833.2 748 71.7
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 3.5e-233 812.0 692 70.8
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 4.5e-228 795.0 782 63.4
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 4.6e-225 785.0 793 52.7
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.6e-222 776.5 744 67.1
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.6e-220 769.2 751 65.9
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 4.2e-218 761.9 754 65.1
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 4.2e-218 761.9 747 65.2
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 7.9e-217 757.7 782 52.8
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 6.7e-216 754.6 635 61.4
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 6.7e-216 754.6 747 64.8
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 8.7e-216 754.2 757 65.0
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.9e-215 753.1 747 64.8
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.8e-213 746.5 752 64.8
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 5.3e-213 745.0 842 58.3
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.7e-211 740.0 774 61.6
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.7e-211 740.0 749 64.6
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.1e-210 737.3 753 63.9
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 1.2e-209 733.8 789 53.4
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 2.1e-209 733.0 725 65.8
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.1e-207 727.2 751 64.0
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 4.1e-205 718.8 793 63.2
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 4.5e-204 715.3 742 63.3
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 3.8e-203 712.2 744 62.8
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 5.0e-203 711.8 747 63.3
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 8.5e-203 711.1 762 61.3
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 3.6e-201 705.7 744 64.4
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 6.1e-201 704.9 761 61.5
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 1.8e-200 703.4 749 62.1
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.8e-200 703.4 752 62.8
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.8e-200 703.4 752 62.8
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 2.3e-200 703.0 794 58.7
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 3.3e-199 699.1 747 63.3
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 5.7e-199 698.4 754 62.6
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 7.4e-199 698.0 754 61.9
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 2.8e-198 696.0 750 61.7
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 3.7e-198 695.7 737 63.0
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 4.8e-198 695.3 755 61.9
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 4.8e-198 695.3 752 62.9
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.1e-197 694.1 762 61.5
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 1.4e-197 693.7 755 62.6
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 2.4e-197 693.0 742 62.1
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 9.1e-197 691.0 762 61.5
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 9.1e-197 691.0 759 60.2
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 4.5e-196 688.7 749 62.8
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 1.3e-195 687.2 825 57.8
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 2.9e-195 686.0 633 57.8
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 2.9e-195 686.0 746 62.3
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 2.7e-193 679.5 750 62.4
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 3.6e-193 679.1 749 62.1
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.0e-192 677.6 771 61.3
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.2e-192 675.2 752 61.6
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 5.2e-192 675.2 752 61.8
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 8.8e-192 674.5 749 62.2
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 1.3e-190 670.6 752 61.7
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.7e-190 670.2 744 61.3
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.7e-190 670.2 757 62.4
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 4.8e-190 668.7 757 61.6
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 8.2e-190 667.9 754 60.7
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 8.2e-190 667.9 752 61.6
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 1.4e-189 667.2 747 61.3
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 3.1e-189 666.0 752 60.9
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 4.1e-189 665.6 707 63.9
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 2.6e-188 662.9 749 61.5
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.5e-188 662.5 752 61.0
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.7e-187 660.2 686 63.6
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.9e-187 659.4 777 60.4
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 3.2e-186 656.0 756 60.8
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-186 655.6 747 60.0
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.5e-186 655.2 747 60.0
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.6e-185 652.5 748 59.9
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 4.7e-185 652.1 748 59.9
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.2e-183 647.5 641 56.5
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 8.3e-182 641.3 752 59.6
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 1.8e-181 640.2 752 58.9
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.6e-180 637.1 753 60.6
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.0e-179 634.4 763 59.0
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.5e-178 630.6 734 58.7
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 5.5e-178 628.6 780 57.4
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 3.6e-177 625.9 745 59.5
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 1.4e-176 624.0 747 59.2
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 8.8e-176 621.3 744 58.9
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 1.5e-175 620.5 781 51.0
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 2.0e-175 620.2 754 58.4
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 2.0e-175 620.2 789 56.3
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 3.7e-174 615.9 743 59.1
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.4e-173 614.0 748 58.3
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 5.4e-173 612.1 770 46.2
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 6.6e-171 605.1 750 58.0
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 1.5e-170 604.0 750 58.0
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 3.3e-170 602.8 755 57.7
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 1.6e-169 600.5 748 57.6
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 1.6e-169 600.5 750 57.3
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 4.7e-169 599.0 750 57.6
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 6.1e-169 598.6 745 57.4
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 5.2e-168 595.5 755 57.1
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 1.5e-162 577.4 783 53.9
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.8e-161 573.2 842 52.9
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 6.1e-161 572.0 753 55.8
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 6.4e-158 562.0 751 56.5
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 4.0e-152 542.7 719 55.6
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 1.1e-149 534.6 703 57.6
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.7e-147 527.3 543 66.9
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 6.4e-142 508.8 750 49.9
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.2e-135 488.0 764 48.7
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 2.9e-134 483.4 561 50.8
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.5e-127 461.1 769 48.5
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.3e-123 448.0 543 49.0
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 7.3e-122 442.2 763 49.1
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 8.1e-121 438.7 449 52.6
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.4e-117 427.2 534 45.7
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.5e-111 407.9 763 48.2
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 3.0e-107 393.7 765 46.9
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 2.5e-106 390.6 440 49.1
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 3.2e-101 373.6 360 76.4
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.3e-99 367.5 362 75.4
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 3.4e-95 353.6 600 39.8
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 4.2e-93 346.7 390 69.0
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.6e-87 327.4 304 82.6
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.5e-77 294.3 402 43.8
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.0e-74 284.6 343 49.3
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 2.9e-62 244.2 378 42.1
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.5e-62 243.0 179 64.2
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-60 238.8 297 46.5
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 4.7e-60 236.9 203 58.6
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 3.1e-56 224.2 477 34.0
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 2.3e-54 218.0 733 28.9
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 7.0e-48 196.4 148 64.2
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 2.0e-47 194.9 591 29.4
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.3e-45 187.2 180 54.4
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 3.4e-42 177.6 461 30.8
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 3.4e-42 177.6 180 53.3
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.2e-40 169.5 180 51.7
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 3.0e-38 164.5 693 27.0
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.6e-36 157.5 116 69.0
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.3e-30 138.3 92 69.6
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.7e-28 130.6 83 74.7
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.0e-27 127.5 84 73.8
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.4e-26 124.0 75 76.0
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-23 114.4 67 74.6
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 7.8e-23 113.2 141 47.5
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-21 109.4 118 46.6
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 4.3e-21 107.5 93 58.1
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.1e-19 102.8 59 79.7
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.2e-19 100.5 61 75.4
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.9e-19 100.1 58 77.6
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.6e-18 98.2 97 51.5
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 2.6e-18 98.2 115 47.8
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-16 92.0 60 70.0
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 7.1e-16 90.1 155 87.1
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 4.6e-15 87.4 154 87.0
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.9e-13 82.0 191 35.6
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-12 79.3 82 48.8
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.1e-12 78.6 139 36.0
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 3.6e-12 77.8 65 53.8
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-10 72.8 75 48.0
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.6e-10 70.1 48 56.2
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 3.2e-08 64.7 343 25.7
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-08 64.3 60 56.7
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 5.1e-06 57.4 87 42.5


User provided reference genes

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