Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 6.7e-227 790.4 420 100.0
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.9e-149 533.1 419 73.0
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 2.8e-148 529.3 420 70.0
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 7.6e-146 521.2 427 72.8
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.8e-140 501.9 424 66.5
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.4e-139 499.6 418 68.7
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.3e-137 493.8 451 65.0
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 6.4e-137 491.5 431 67.5
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.4e-136 490.3 423 67.1
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 2.4e-136 489.6 432 62.7
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 3.5e-135 485.7 422 66.4
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.7e-134 481.5 456 61.6
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.6e-132 476.9 422 66.8
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.6e-132 476.9 442 62.2
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 3.7e-132 475.7 463 60.7
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.1e-132 474.6 434 63.1
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 2.4e-128 463.0 458 59.6
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 9.3e-128 461.1 438 60.5
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 3.5e-127 459.1 444 61.9
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 4.6e-127 458.8 454 59.3
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 6.0e-127 458.4 456 61.4
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 7.9e-127 458.0 473 57.7
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.3e-126 457.2 433 63.0
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.8e-126 456.8 443 60.9
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-126 456.8 438 60.3
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 2.3e-126 456.4 482 60.0
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.0e-126 456.1 441 60.1
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.5e-125 453.8 416 64.2
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 2.5e-125 453.0 454 59.9
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.6e-124 450.3 444 61.3
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 3.7e-124 449.1 438 61.2
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 2.4e-123 446.4 470 58.1
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.7e-121 440.3 450 61.1
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 4.9e-121 438.7 450 59.1
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 4.2e-120 435.6 460 59.8
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 5.5e-120 435.3 455 56.9
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 9.3e-120 434.5 420 61.4
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.2e-119 434.1 459 57.3
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 1.2e-119 434.1 453 57.6
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.6e-119 433.7 465 55.7
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.6e-119 433.7 458 56.3
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.6e-119 433.7 443 61.2
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 1.3e-118 430.6 474 57.0
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 2.3e-118 429.9 490 56.9
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 1.3e-116 424.1 448 58.0
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 1.3e-116 424.1 431 62.2
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 2.2e-116 423.3 500 53.6
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 2.8e-116 422.9 457 57.3
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.8e-116 422.2 490 54.9
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.4e-115 420.6 493 54.6
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.1e-115 419.5 494 55.3
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 9.0e-115 417.9 426 60.6
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.5e-114 417.2 430 60.5
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 1.5e-114 417.2 494 55.3
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 7.6e-114 414.8 439 56.5
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 1.0e-113 414.5 457 55.4
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 1.7e-113 413.7 490 53.5
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 3.8e-113 412.5 446 56.3
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 5.0e-113 412.1 487 56.1
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.1e-112 411.0 441 56.9
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.4e-112 410.6 467 55.2
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.4e-112 410.6 494 55.9
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.9e-112 410.2 481 53.8
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 2.5e-112 409.8 476 53.8
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 7.2e-112 408.3 419 58.9
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.0e-110 404.4 449 56.6
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.5e-109 400.6 441 56.9
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 5.7e-109 398.7 443 58.5
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 7.4e-109 398.3 403 61.5
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 9.7e-109 397.9 449 54.8
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.7e-108 397.1 526 49.8
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 2.2e-108 396.7 437 56.1
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 6.3e-108 395.2 454 55.3
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 3.1e-107 392.9 439 54.7
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 6.9e-107 391.7 442 54.5
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 6.9e-107 391.7 512 50.8
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.2e-106 391.0 438 55.0
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.5e-106 390.6 485 53.6
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.0e-105 387.9 459 53.8
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 3.8e-105 386.0 510 49.8
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 1.4e-104 384.0 469 53.9
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 2.1e-103 380.2 411 58.9
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 2.7e-103 379.8 472 53.8
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.1e-103 378.6 436 57.1
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 6.1e-103 378.6 469 51.8
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.3e-102 376.7 436 56.4
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.1e-101 374.4 431 57.3
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 2.0e-101 373.6 448 53.6
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.3e-100 370.9 432 55.6
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 4.8e-100 369.0 496 49.0
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.0e-98 363.6 415 55.7
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 3.4e-98 362.8 435 54.3
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 4.5e-98 362.5 446 53.4
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.1e-96 357.8 457 51.0
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 4.2e-96 355.9 436 53.7
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.1e-95 353.6 439 52.8
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 2.7e-95 353.2 498 51.4
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 6.1e-95 352.1 448 50.7
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 8.0e-95 351.7 440 53.0
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 3.3e-93 346.3 398 57.5
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 5.3e-91 339.0 386 53.9
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.3e-91 339.0 444 49.3
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 5.9e-90 335.5 502 48.0
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 3.8e-89 332.8 516 47.5
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 8.5e-89 331.6 425 50.1
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.6e-87 326.2 484 48.6
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 5.9e-82 308.9 207 76.3
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 8.5e-81 305.1 411 48.9
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.2e-79 301.2 442 46.4
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 6.8e-78 295.4 383 50.7
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.3e-76 291.2 171 84.2
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 2.2e-76 290.4 439 44.9
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 4.8e-76 289.3 510 41.2
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 4.8e-76 289.3 283 58.7
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.9e-72 277.3 472 42.8
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.1e-71 272.3 189 75.1
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.4e-70 271.2 480 42.1
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 3.0e-70 270.0 483 44.9
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 4.0e-70 269.6 318 57.2
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.1e-64 251.5 369 49.3
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 1.5e-64 251.1 364 47.8
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.5e-56 224.6 128 85.9
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 2.3e-54 217.2 483 37.3
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 1.3e-49 201.4 171 64.3
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.0e-49 200.3 325 41.8
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 2.5e-48 197.2 377 38.2
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 3.6e-39 166.8 158 55.1
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.4e-38 164.1 416 35.3
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 6.4e-36 156.0 160 51.2
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 2.1e-34 151.0 385 33.2
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.0e-29 134.4 317 35.3
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 3.5e-26 123.6 258 32.6
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 3.9e-25 120.2 65 90.8
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 5.1e-25 119.8 129 52.7
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.3e-24 115.9 96 64.6
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 1.3e-20 105.1 97 60.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.0e-18 96.3 113 53.1
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.9e-16 91.3 396 29.3
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.9e-16 91.3 396 29.3
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.4e-14 85.1 112 45.5
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.4e-14 85.1 112 45.5
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 7.6e-13 79.3 60 65.0
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.3e-12 78.6 102 49.0
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 2.2e-12 77.8 243 30.9
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 1.3e-07 62.0 159 39.0
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 4.0e-06 57.0 127 28.3
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 4.0e-06 57.0 127 28.3
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 4.0e-06 57.0 115 30.4
vmacro14248 Vaccinium macrocarpon HOM05D005375 ORTHO05D426817 4.0e-06 57.0 40 72.5
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 9.0e-06 55.8 119 28.6
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 9.0e-06 55.8 110 25.5
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 9.0e-06 55.8 110 25.5
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 9.0e-06 55.8 110 25.5
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 9.0e-06 55.8 127 25.2


User provided reference genes

Program Settings