Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 3.4e-194 681.4 324 100.0
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 3.9e-126 455.3 314 71.3
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 1.8e-118 429.9 317 68.5
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 1.1e-117 427.2 313 67.4
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 9.7e-117 424.1 325 68.3
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 7.0e-115 417.9 319 65.5
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 2.9e-105 386.0 320 63.1
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 3.2e-104 382.5 320 61.6
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 3.6e-103 379.0 317 59.9
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 3.0e-102 375.9 319 63.0
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 8.8e-102 374.4 313 61.0
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 1.5e-101 373.6 319 62.7
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 2.0e-101 373.2 326 58.6
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 2.2e-100 369.8 318 61.9
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 4.8e-100 368.6 326 58.0
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 1.4e-99 367.1 315 59.0
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 6.6e-97 358.2 326 59.2
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.9e-96 356.7 320 58.4
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 1.2e-95 354.0 316 59.2
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 1.6e-95 353.6 313 59.1
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 4.7e-95 352.1 313 60.4
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 6.1e-95 351.7 316 59.2
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 3.0e-94 349.4 319 56.1
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 8.9e-94 347.8 310 57.7
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 7.5e-93 344.7 327 56.6
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 1.7e-92 343.6 325 56.9
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 3.7e-92 342.4 210 76.7
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 1.1e-91 340.9 324 58.0
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.4e-91 340.5 321 55.1
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 2.4e-91 339.7 315 55.2
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 3.2e-91 339.3 320 55.9
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 9.2e-91 337.8 329 57.1
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 5.9e-90 335.1 326 56.1
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 5.9e-90 335.1 318 57.2
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 5.9e-90 335.1 193 80.3
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 1.7e-89 333.6 333 56.5
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 6.6e-89 331.6 341 54.3
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 8.6e-89 331.3 320 55.9
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 8.6e-89 331.3 202 75.2
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 1.5e-88 330.5 336 55.4
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 1.9e-88 330.1 330 55.5
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 1.9e-88 330.1 308 56.2
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.3e-88 329.3 323 55.4
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 4.3e-88 328.9 326 55.2
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 9.5e-88 327.8 328 55.5
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 9.5e-88 327.8 276 59.1
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 3.6e-87 325.9 322 54.0
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 3.6e-87 325.9 324 54.9
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 4.7e-87 325.5 192 77.1
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 1.4e-86 323.9 330 53.9
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 2.3e-86 323.2 241 63.1
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 2.3e-86 323.2 193 75.6
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 2.3e-86 323.2 307 55.7
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 3.1e-86 322.8 266 59.8
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 4.0e-86 322.4 321 54.5
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 4.0e-86 322.4 317 53.9
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 5.2e-86 322.0 266 58.3
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 6.8e-86 321.6 192 77.6
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 8.9e-86 321.2 314 54.8
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 8.9e-86 321.2 334 54.2
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 2.0e-85 320.1 307 54.7
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 2.6e-85 319.7 305 55.1
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 2.6e-85 319.7 297 55.6
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 5.8e-85 318.5 330 53.0
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 1.3e-84 317.4 193 73.6
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.7e-84 317.0 313 53.4
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 3.7e-84 315.8 283 57.6
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 3.7e-84 315.8 244 63.5
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 8.3e-84 314.7 213 70.4
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 1.4e-83 313.9 320 53.4
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 1.4e-83 313.9 305 54.1
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 1.4e-83 313.9 192 75.5
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 1.9e-83 313.5 302 56.0
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 1.9e-83 313.5 302 56.0
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 1.9e-83 313.5 193 72.5
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 2.4e-83 313.2 315 53.3
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 5.4e-83 312.0 197 73.6
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 5.4e-83 312.0 318 52.8
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 2.0e-82 310.1 314 54.5
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 2.7e-82 309.7 260 60.0
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 3.5e-82 309.3 325 52.3
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 3.5e-82 309.3 325 52.3
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 3.5e-82 309.3 349 50.7
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 4.6e-82 308.9 330 51.8
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 6.0e-82 308.5 338 52.7
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 7.8e-82 308.1 272 56.6
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 1.0e-81 307.8 331 52.3
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 1.7e-81 307.0 329 51.1
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 2.3e-81 306.6 318 52.5
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 3.9e-81 305.8 197 70.6
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 3.9e-81 305.8 324 52.8
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 1.1e-80 304.3 286 54.5
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 2.5e-80 303.1 244 60.2
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 1.6e-79 300.4 192 74.0
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 3.6e-79 299.3 323 49.2
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 6.2e-79 298.5 226 64.6
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 8.0e-79 298.1 239 61.1
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 1.1e-78 297.7 267 54.7
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 3.1e-78 296.2 320 49.1
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 4.0e-78 295.8 194 67.5
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 8.9e-78 294.7 230 60.0
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 1.3e-76 290.8 198 64.1
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 3.0e-73 279.6 325 48.9
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 2.5e-72 276.6 302 51.7
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 1.2e-71 274.2 165 75.2
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 4.0e-70 269.2 151 80.1
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 2.9e-68 263.1 193 61.1
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 6.4e-68 261.9 193 61.7
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 8.3e-68 261.5 197 61.4
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 3.2e-67 259.6 185 61.6
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 5.1e-65 252.3 193 58.0
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 6.6e-65 251.9 200 59.0
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 8.6e-65 251.5 279 50.9
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 1.9e-64 250.4 183 61.2
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 4.3e-64 249.2 193 58.0
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 2.8e-63 246.5 187 61.0
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 1.2e-61 241.1 202 52.5
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 8.4e-60 235.0 185 58.4
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 8.4e-60 235.0 253 50.6
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 4.2e-59 232.6 191 57.1
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 7.1e-59 231.9 198 53.5
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 3.5e-58 229.6 197 52.8
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 7.6e-53 211.8 217 53.0
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 1.3e-52 211.1 180 52.2
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 9.3e-51 204.9 121 79.3
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 1.5e-45 187.6 185 45.9
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 1.8e-38 164.1 164 45.7
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 1.4e-35 154.5 218 39.0
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 4.2e-35 152.9 322 33.5
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 2.3e-33 147.1 159 46.5
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 2.3e-25 120.6 112 47.3
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 2.8e-23 113.6 65 81.5
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 4.8e-23 112.8 60 86.7
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 9.0e-22 108.6 91 53.8
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 4.6e-18 96.3 58 77.6
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 3.0e-09 67.0 91 39.6
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 1.8e-06 57.8 33 78.8


User provided reference genes

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