Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.6226 Avicennia marina HOM05D007606 ORTHO05D009600 4.8e-42 175.3 109 100.0
Migut.J01493 Erythranthe guttata HOM05D007606 ORTHO05D009600 1.0e-28 131.0 113 68.1
SGA_v2.0_scaffold66G22417 Striga asiatica HOM05D007606 ORTHO05D009600 2.0e-27 126.7 110 74.5
Sopen07g006820 Solanum pennellii HOM05D007606 ORTHO05D009600 1.1e-25 120.9 65 89.2
PGSC0003DMG400004088 Solanum tuberosum HOM05D007606 ORTHO05D009600 1.1e-25 120.9 65 89.2
Oeu025687.1 Olea europaea HOM05D007606 ORTHO05D009600 5.3e-25 118.6 64 89.1
CAN.G321.18 Capsicum annuum HOM05D007606 ORTHO05D009600 9.1e-25 117.9 65 87.7
Cc06_g13140 Coffea canephora HOM05D007606 ORTHO05D009600 1.6e-24 117.1 66 84.8
Cpa.g.sc523.4 Carica papaya HOM05D007606 ORTHO05D009600 6.5e-23 111.7 65 83.1
Sabra18G0078500 Salix brachista HOM05D007606 ORTHO05D009600 8.5e-23 111.3 66 81.8
MD16G1256400 Malus domestica HOM05D007606 ORTHO05D009600 1.5e-22 110.5 66 81.8
Potri.018G091300 Populus trichocarpa HOM05D007606 ORTHO05D009600 1.9e-22 110.2 66 81.8
RcHm_v2.0_Chr4g0401721 Rosa chinensis HOM05D007606 ORTHO05D009600 2.5e-22 109.8 62 85.5
Lj5P601T23 Lonicera japonica HOM05D007606 ORTHO05D009600 3.2e-22 109.4 63 82.5
Prupe.1G084400 Prunus persica HOM05D007606 ORTHO05D009600 3.2e-22 109.4 63 82.5
CiPaw.07G193100 Carya illinoinensis HOM05D007606 ORTHO05D009600 5.5e-22 108.6 63 82.5
Manes.14G154600 Manihot esculenta HOM05D007606 ORTHO05D009600 7.2e-22 108.2 66 80.3
THA.LOC104813519 Tarenaya hassleriana HOM05D007606 ORTHO05D009600 9.4e-22 107.8 66 80.3
FvH4_4g07990 Fragaria vesca HOM05D007606 ORTHO05D009600 1.2e-21 107.5 62 83.9
FAN17G2268 Fragaria x ananassa HOM05D007606 ORTHO05D009600 1.2e-21 107.5 62 83.9
MD13G1252200 Malus domestica HOM05D007606 ORTHO05D009600 1.2e-21 107.5 114 55.3
CsaV3_1G031690 Cucumis sativus L. HOM05D007606 ORTHO05D009600 1.6e-21 107.1 64 81.2
QL02p097943 Quercus lobata HOM05D007606 ORTHO05D009600 1.6e-21 107.1 62 82.3
Sc18g0007510 Simmondsia chinensis HOM05D007606 ORTHO05D009600 1.6e-21 107.1 62 83.9
Hma1.2p1_1025F.1_g249400 Hydrangea macrophylla HOM05D007606 ORTHO05D009600 2.7e-21 106.3 63 81.0
FAN07G2281 Fragaria x ananassa HOM05D007606 ORTHO05D009600 3.6e-21 105.9 62 82.3
Nitab4.5_0000055g0310 Nicotiana tabacum HOM05D007606 ORTHO05D009600 3.6e-21 105.9 59 88.1
Atru.chr7.594 Acer truncatum HOM05D007606 ORTHO05D009600 4.7e-21 105.5 63 79.4
Ciclev10009582m.g Citrus clementina HOM05D007606 ORTHO05D009600 4.7e-21 105.5 62 82.3
HanXRQChr12g0365451 Helianthus annuus HOM05D007606 ORTHO05D009600 4.7e-21 105.5 65 76.9
MELO3C017454.2 Cucumis melo HOM05D007606 ORTHO05D009600 6.1e-21 105.1 64 79.7
Glyma.13G097200 Glycine max HOM05D007606 ORTHO05D009600 6.1e-21 105.1 62 82.3
Lsat_1_v5_gn_8_67821 Lactuca sativa HOM05D007606 ORTHO05D009600 6.1e-21 105.1 66 75.8
Actinidia01312 Actinidia chinensis HOM05D007606 ORTHO05D009600 8.0e-21 104.8 63 82.5
CSS0005882 Camellia sinensis var. sinensis HOM05D007606 ORTHO05D009600 8.0e-21 104.8 63 81.0
Gohir.D08G193500 Gossypium hirsutum HOM05D007606 ORTHO05D009600 8.0e-21 104.8 66 77.3
Gorai.004G203800 Gossypium raimondii HOM05D007606 ORTHO05D009600 8.0e-21 104.8 66 77.3
Eucgr.C02351 Eucalyptus grandis HOM05D007606 ORTHO05D009600 1.0e-20 104.4 62 79.0
Glyma.17G062400 Glycine max HOM05D007606 ORTHO05D009600 1.0e-20 104.4 61 83.6
Aa31LG3G13250 Aethionema arabicum HOM05D007606 ORTHO05D009600 1.4e-20 104.0 63 79.4
Psat4g012880 Pisum sativum HOM05D007606 ORTHO05D009600 1.4e-20 104.0 63 79.4
Medtr4g127860 Medicago truncatula HOM05D007606 ORTHO05D009600 1.8e-20 103.6 63 79.4
SHI02893 Sapria himalayana HOM05D007606 ORTHO05D009600 1.8e-20 103.6 65 75.4
EL10Ac8g18293 Beta vulgaris HOM05D007606 ORTHO05D009600 2.3e-20 103.2 62 79.0
COL.COLO4_37736 Corchorus olitorius HOM05D007606 ORTHO05D009600 3.0e-20 102.8 62 80.6
PSO063G2142 Papaver somniferum HOM05D007606 ORTHO05D009600 3.0e-20 102.8 112 50.9
Sed0005573 Sechium edule HOM05D007606 ORTHO05D009600 3.0e-20 102.8 103 56.3
TAR383G0717 Trochodendron aralioides HOM05D007606 ORTHO05D009600 3.0e-20 102.8 63 77.8
Sp6g19090 Schrenkiella parvula HOM05D007606 ORTHO05D009600 4.0e-20 102.4 63 77.8
Aqoxy7G03025 Aquilegia oxysepala HOM05D007606 ORTHO05D009600 5.2e-20 102.1 116 50.0
Gohir.A08G174900 Gossypium hirsutum HOM05D007606 ORTHO05D009600 5.2e-20 102.1 62 79.0
Ah.09g229950 Amaranthus hybridus HOM05D007606 ORTHO05D009600 6.8e-20 101.7 61 78.7
CANSAT11G0497 Cannabis sativa HOM05D007606 ORTHO05D009600 6.8e-20 101.7 62 79.0
Carub.0008s1789 Capsella rubella HOM05D007606 ORTHO05D009600 6.8e-20 101.7 63 77.8
AL8G33350 Arabidopsis lyrata HOM05D007606 ORTHO05D009600 8.8e-20 101.3 63 77.8
AT5G57370 Arabidopsis thaliana HOM05D007606 ORTHO05D009600 8.8e-20 101.3 63 77.8
CARHR271170 Cardamine hirsuta HOM05D007606 ORTHO05D009600 8.8e-20 101.3 63 77.8
Nn5g27171 Nelumbo nucifera HOM05D007606 ORTHO05D009600 8.8e-20 101.3 63 77.8
Rhsim03G0264900 Rhododendron simsii HOM05D007606 ORTHO05D009600 1.2e-19 100.9 66 75.8
GSVIVG01029223001 Vitis vinifera HOM05D007606 ORTHO05D009600 1.5e-19 100.5 63 79.4
TWI32G0742 Tripterygium wilfordii HOM05D007606 ORTHO05D009600 2.6e-19 99.8 62 79.0
BcaC03g14159 Brassica carinata HOM05D007606 ORTHO05D009600 4.4e-19 99.0 63 76.2
BcaC04g19971 Brassica carinata HOM05D007606 ORTHO05D009600 4.4e-19 99.0 63 76.2
A02p08550 Brassica napus HOM05D007606 ORTHO05D009600 4.4e-19 99.0 63 76.2
C02p14290 Brassica napus HOM05D007606 ORTHO05D009600 4.4e-19 99.0 63 76.2
C09p49270 Brassica napus HOM05D007606 ORTHO05D009600 4.4e-19 99.0 63 76.2
BolC2t07555H Brassica oleracea HOM05D007606 ORTHO05D009600 4.4e-19 99.0 63 76.2
BolC9t57778H Brassica oleracea HOM05D007606 ORTHO05D009600 4.4e-19 99.0 63 76.2
BraA02t05924Z Brassica rapa HOM05D007606 ORTHO05D009600 4.4e-19 99.0 63 76.2
Hund26341 Selenicereus undatus HOM05D007606 ORTHO05D009600 4.4e-19 99.0 61 78.7
Phvul.003G144300 Phaseolus vulgaris HOM05D007606 ORTHO05D009600 1.3e-18 97.4 58 81.0
BcaB05g22341 Brassica carinata HOM05D007606 ORTHO05D009600 1.7e-18 97.1 68 72.1
A10p14850 Brassica napus HOM05D007606 ORTHO05D009600 1.7e-18 97.1 62 75.8
BraA10t43563Z Brassica rapa HOM05D007606 ORTHO05D009600 1.7e-18 97.1 62 75.8
SEGI_36552 Sequoiadendron giganteum HOM05D007606 ORTHO05D009600 2.8e-18 96.3 59 81.4
HPP92_010764 Vanilla planifolia HOM05D007606 ORTHO05D009600 6.3e-18 95.1 62 74.2
Duzib168G1965 Durio zibethinus HOM05D007606 ORTHO05D009600 1.4e-17 94.0 55 83.6
Lalb_Chr13g0300161 Lupinus albus HOM05D007606 ORTHO05D009600 1.4e-17 94.0 55 81.8
Os02g0461600 Oryza sativa ssp. japonica HOM05D007606 ORTHO05D009600 2.4e-17 93.2 63 73.0
Zm00001eb327770 Zea mays HOM05D007606 ORTHO05D009600 5.4e-17 92.0 63 71.4
HanXRQChr08g0212621 Helianthus annuus HOM05D007606 ORTHO05D009600 7.0e-17 91.7 61 72.1
CBR_g51476 Chara braunii HOM05D007606 ORTHO05D009600 9.1e-17 91.3 65 72.3
AUR62021308 Chenopodium quinoa HOM05D007606 ORTHO05D009600 9.1e-17 91.3 51 86.3
Thecc.09G175900 Theobroma cacao HOM05D007606 ORTHO05D009600 1.2e-16 90.9 55 80.0
BcaB08g36096 Brassica carinata HOM05D007606 ORTHO05D009600 1.6e-16 90.5 63 73.0
Ca_21234_v3 Cicer arietinum L. HOM05D007606 ORTHO05D009600 1.6e-16 90.5 51 86.3
PSO339G0750 Papaver somniferum HOM05D007606 ORTHO05D009600 5.9e-16 88.6 55 76.4
SMO358G0723 Selaginella moellendorffii HOM05D007606 ORTHO05D009600 1.1e-14 84.3 60 70.0
AagrBONN_evm.TU.Sc2ySwM_362.441 Anthoceros agrestis HOM05D007606 ORTHO05D009600 2.5e-14 83.2 60 70.0
Mapoly0026s0023 Marchantia polymorpha HOM05D007606 ORTHO05D009600 2.5e-14 83.2 64 65.6
Pp3c7_10050 Physcomitrium patens HOM05D007606 ORTHO05D009600 5.5e-14 82.0 63 68.3
FAN12G2299 Fragaria x ananassa HOM05D007606 ORTHO05D009600 9.4e-14 81.3 48 81.2
arahy.Tifrunner.gnm1.ann1.TB3R4X Arachis hypogaea HOM05D007606 ORTHO05D009600 2.7e-13 79.7 50 78.0
FAN22G0657 Fragaria x ananassa HOM05D007606 ORTHO05D009600 6.1e-13 78.6 47 78.7
Cre10.g465950 Chlamydomonas reinhardtii HOM05D007606 ORTHO05D009600 8.6e-07 58.2 60 48.3


User provided reference genes

Program Settings