Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 1.2e-117 426.4 204 100.0
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 1.4e-60 236.9 169 70.4
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 3.2e-57 225.7 169 66.9
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 3.0e-55 219.2 175 64.6
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 3.0e-55 219.2 175 64.0
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 5.1e-55 218.4 159 68.6
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 2.5e-54 216.1 135 72.6
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 7.4e-54 214.5 112 85.7
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 7.4e-54 214.5 130 76.2
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.3e-53 213.8 130 76.2
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.1e-52 210.7 153 69.3
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 1.1e-52 210.7 137 69.3
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.4e-52 209.5 124 77.4
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.4e-52 209.5 132 72.0
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 4.0e-52 208.8 117 80.3
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 4.0e-52 208.8 124 77.4
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 4.0e-52 208.8 124 77.4
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 5.3e-52 208.4 124 76.6
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 6.9e-52 208.0 114 81.6
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 9.0e-52 207.6 155 65.8
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 9.0e-52 207.6 176 60.8
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 9.0e-52 207.6 113 80.5
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 9.0e-52 207.6 113 80.5
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 1.2e-51 207.2 118 79.7
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 1.2e-51 207.2 111 83.8
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 2.0e-51 206.5 191 56.5
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.6e-51 206.1 125 76.8
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 2.6e-51 206.1 114 82.5
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 3.4e-51 205.7 163 62.6
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 3.4e-51 205.7 138 68.1
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 4.5e-51 205.3 164 63.4
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 4.5e-51 205.3 154 63.0
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 5.8e-51 204.9 154 64.3
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 5.8e-51 204.9 113 81.4
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 7.6e-51 204.5 123 74.0
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.0e-50 204.1 129 75.2
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 1.3e-50 203.8 111 80.2
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 1.7e-50 203.4 185 57.3
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 1.7e-50 203.4 139 68.3
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 2.2e-50 203.0 133 69.9
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 2.9e-50 202.6 171 56.1
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 2.9e-50 202.6 155 60.6
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 2.9e-50 202.6 110 81.8
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 2.9e-50 202.6 174 60.3
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 3.8e-50 202.2 152 61.8
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 4.9e-50 201.8 110 82.7
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 8.4e-50 201.1 141 65.2
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 8.4e-50 201.1 111 79.3
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 1.1e-49 200.7 122 73.0
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 1.1e-49 200.7 178 56.2
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 1.4e-49 200.3 161 61.5
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.4e-49 200.3 170 60.0
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.4e-49 200.3 136 67.6
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.9e-49 199.9 156 61.5
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 2.5e-49 199.5 178 55.6
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 2.5e-49 199.5 178 55.6
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 2.5e-49 199.5 130 73.8
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 3.2e-49 199.1 134 70.1
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 4.2e-49 198.7 125 71.2
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 4.2e-49 198.7 139 66.9
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 4.2e-49 198.7 173 57.2
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 5.5e-49 198.4 155 62.6
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 5.5e-49 198.4 114 77.2
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 5.5e-49 198.4 111 78.4
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 7.1e-49 198.0 111 78.4
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 1.6e-48 196.8 168 55.4
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 1.6e-48 196.8 168 55.4
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 3.5e-48 195.7 108 80.6
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 4.6e-48 195.3 152 60.5
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 4.6e-48 195.3 156 62.2
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 1.0e-47 194.1 186 53.8
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 1.0e-47 194.1 113 77.9
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 1.8e-47 193.4 165 58.2
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 3.0e-47 192.6 123 69.1
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 3.0e-47 192.6 185 54.1
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 3.9e-47 192.2 114 72.8
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 6.7e-47 191.4 124 70.2
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.7e-47 191.4 107 78.5
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 8.7e-47 191.0 167 56.3
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 1.1e-46 190.7 133 66.2
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 1.1e-46 190.7 125 68.0
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.1e-46 190.7 154 58.4
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.5e-46 190.3 115 73.9
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 1.9e-46 189.9 167 59.3
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 2.5e-46 189.5 108 77.8
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 2.5e-46 189.5 108 77.8
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 2.5e-46 189.5 165 58.8
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 3.3e-46 189.1 129 69.8
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 4.3e-46 188.7 114 76.3
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 6.3e-45 184.9 105 75.2
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 5.3e-44 181.8 122 69.7
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 1.2e-43 180.6 162 56.2
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 8.5e-42 174.5 123 69.1
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 1.4e-41 173.7 115 71.3
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.6e-40 170.2 92 81.5
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 6.1e-40 168.3 111 69.4
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 8.7e-39 164.5 99 72.7
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.3e-37 160.6 174 50.6
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 2.6e-35 152.9 172 44.2
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.2e-34 149.8 107 62.6
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 2.9e-34 149.4 150 49.3
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 1.4e-33 147.1 107 60.7
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.4e-33 147.1 116 60.3
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 7.2e-33 144.8 107 60.7
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 9.4e-33 144.4 106 61.3
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 1.6e-32 143.7 154 44.8
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 2.1e-32 143.3 107 57.9
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 2.7e-32 142.9 107 59.8
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 2.7e-32 142.9 107 57.0
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 3.6e-32 142.5 105 61.0
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 4.6e-32 142.1 107 58.9
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 4.6e-32 142.1 103 61.2
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 6.1e-32 141.7 158 45.6
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 7.9e-32 141.4 107 56.1
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 1.0e-31 141.0 106 58.5
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 1.0e-31 141.0 107 58.9
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 1.4e-31 140.6 106 58.5
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 1.4e-31 140.6 170 42.9
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.8e-31 140.2 176 43.2
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.8e-31 140.2 103 61.2
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.8e-31 140.2 176 44.9
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.3e-31 139.8 103 60.2
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 5.1e-31 138.7 109 57.8
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 8.8e-31 137.9 125 52.8
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 2.0e-30 136.7 106 55.7
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 2.0e-30 136.7 107 57.0
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 3.3e-30 136.0 156 48.7
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 4.3e-30 135.6 107 56.1
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 5.7e-30 135.2 140 42.9
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 7.4e-30 134.8 107 58.9
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 9.7e-30 134.4 107 54.2
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 1.3e-29 134.0 154 46.1
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 1.7e-29 133.7 107 54.2
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 2.2e-29 133.3 107 54.2
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 2.8e-29 132.9 108 53.7
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.7e-29 132.5 155 43.2
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 6.3e-29 131.7 107 53.3
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 8.2e-29 131.3 142 44.4
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 8.2e-29 131.3 142 44.4
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.8e-28 130.2 109 53.2
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 1.8e-28 130.2 168 41.7
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 3.1e-28 129.4 107 54.2
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 3.1e-28 129.4 95 62.1
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 1.2e-27 127.5 162 42.6
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.5e-27 127.1 141 44.0
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.0e-27 126.7 155 41.9
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 5.9e-27 125.2 107 50.5
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.3e-26 124.0 173 38.2
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 2.2e-26 123.2 106 51.9
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 2.9e-26 122.9 125 46.4
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 2.9e-26 122.9 103 58.3
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 6.5e-26 121.7 97 55.7
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 1.9e-25 120.2 121 45.5
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 2.5e-25 119.8 59 84.7
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 3.2e-25 119.4 88 60.2
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 9.4e-25 117.9 59 86.4
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 2.1e-24 116.7 144 43.8
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 2.1e-24 116.7 104 50.0
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 7.9e-24 114.8 115 49.6
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 9.7e-22 107.8 53 83.0
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 2.2e-21 106.7 59 78.0
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 1.4e-20 104.0 191 32.5
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.8e-20 103.6 135 45.2
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 2.0e-19 100.1 105 48.6
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 1.3e-18 97.4 107 45.8
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 5.0e-18 95.5 93 46.2
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 6.5e-18 95.1 214 29.0
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 2.1e-16 90.1 61 60.7
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 9.7e-14 81.3 120 45.0
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 9.1e-12 74.7 77 46.8
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 8.0e-08 61.6 47 55.3
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 2.3e-07 60.1 51 58.8
Lalb_Chr05g0217181 Lupinus albus HOM05D003884 ORTHO05D004482 5.2e-07 58.9 47 55.3
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 1.2e-06 57.8 48 52.1
AUR62005315 Chenopodium quinoa HOM05D003884 ORTHO05D004482 5.7e-06 55.5 80 40.0
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 5.7e-06 55.5 95 36.8
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 7.5e-06 55.1 46 54.3
RcHm_v2.0_Chr4g0444421 Rosa chinensis HOM05D003884 ORTHO05D004482 9.8e-06 54.7 88 37.5


User provided reference genes

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