Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 6.2e-290 1000.0 471 100.0
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 1.6e-192 676.4 461 70.7
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.7e-191 672.9 443 72.2
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 1.6e-173 613.2 441 66.0
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 2.4e-172 609.4 443 65.9
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 3.1e-172 609.0 403 67.0
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 6.9e-172 607.8 433 64.7
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.0e-170 604.0 441 64.4
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 2.2e-170 602.8 437 64.5
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 4.9e-170 601.7 383 69.7
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 9.3e-169 597.4 367 71.9
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 5.1e-167 591.7 367 70.8
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 1.9e-166 589.7 374 69.3
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 4.3e-166 588.6 401 66.3
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 2.8e-165 585.9 415 64.3
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 3.7e-165 585.5 434 62.0
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 4.8e-165 585.1 382 68.8
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 4.1e-164 582.0 419 63.0
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 9.0e-164 580.9 436 63.5
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 1.2e-163 580.5 372 68.3
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 1.5e-163 580.1 414 65.0
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 1.5e-163 580.1 386 68.9
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 2.6e-163 579.3 392 66.1
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 2.6e-163 579.3 373 69.2
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 2.6e-163 579.3 384 67.2
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 2.2e-162 576.2 405 64.4
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 2.2e-162 576.2 372 69.4
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 2.9e-162 575.9 368 69.8
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.9e-162 575.9 389 65.8
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 6.5e-162 574.7 364 69.8
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 8.5e-162 574.3 401 65.1
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 8.5e-162 574.3 404 65.3
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 1.4e-161 573.5 397 65.0
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 4.2e-161 572.0 369 67.2
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 4.2e-161 572.0 419 62.3
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 7.2e-161 571.2 366 67.8
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.2e-160 570.5 366 68.6
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 1.2e-160 570.5 365 69.9
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 1.6e-160 570.1 381 66.7
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 2.7e-160 569.3 369 67.5
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 6.1e-160 568.2 368 67.9
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 6.1e-160 568.2 456 59.4
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 7.9e-160 567.8 430 60.7
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 1.0e-159 567.4 398 64.6
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 1.4e-159 567.0 387 67.4
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 1.8e-159 566.6 394 65.7
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 3.9e-159 565.5 438 60.3
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 3.9e-159 565.5 389 64.5
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 3.9e-159 565.5 437 60.2
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 5.1e-159 565.1 368 67.9
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 5.1e-159 565.1 419 62.1
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 5.1e-159 565.1 369 68.0
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 8.8e-159 564.3 369 67.8
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 1.1e-158 563.9 368 67.1
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 1.5e-158 563.5 366 66.9
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 2.5e-158 562.8 372 66.7
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 4.3e-158 562.0 419 61.3
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 9.7e-158 560.8 419 61.6
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 9.7e-158 560.8 368 67.1
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 1.3e-157 560.5 372 66.7
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 1.3e-157 560.5 367 67.0
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 3.7e-157 558.9 459 58.6
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 5.3e-156 555.1 381 66.1
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 6.9e-156 554.7 368 66.0
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 1.5e-155 553.5 369 66.7
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 2.0e-155 553.1 389 65.0
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 2.0e-155 553.1 389 65.0
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 1.7e-154 550.1 424 61.8
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 3.8e-154 548.9 367 67.3
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 5.0e-154 548.5 374 64.7
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 6.5e-154 548.1 390 65.9
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 8.5e-154 547.7 370 65.4
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 1.4e-153 547.0 388 64.2
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 1.4e-153 547.0 347 70.6
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 2.5e-153 546.2 388 64.4
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 3.2e-153 545.8 363 67.5
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 7.2e-153 544.7 366 65.3
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 2.7e-152 542.7 388 62.9
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 1.8e-151 540.0 395 63.0
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 2.3e-151 539.7 401 62.1
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 4.4e-150 535.4 419 61.3
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 9.1e-148 527.7 366 63.9
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 2.6e-147 526.2 416 59.1
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.8e-146 522.3 388 61.6
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 3.2e-145 519.2 337 69.4
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 3.0e-143 512.7 364 64.3
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 2.6e-142 509.6 347 66.6
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 4.2e-137 492.3 411 58.9
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 9.4e-137 491.1 372 61.0
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 8.8e-135 484.6 354 61.9
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 1.7e-133 480.3 406 54.7
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.6e-131 473.8 306 69.9
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 2.2e-130 469.9 322 64.6
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 3.8e-130 469.2 307 69.1
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 5.0e-130 468.8 379 56.5
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 8.5e-130 468.0 363 58.4
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 4.0e-127 459.1 367 53.4
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 7.5e-126 454.9 367 52.9
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 4.8e-125 452.2 289 68.5
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 6.8e-119 431.8 387 52.2
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 2.2e-117 426.8 312 62.2
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 4.7e-112 409.1 380 48.4
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 1.1e-100 371.3 260 66.5
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 2.1e-96 357.1 226 71.2
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 3.6e-96 356.3 281 60.9
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 7.1e-92 342.0 366 46.4
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 8.4e-77 292.0 381 42.8
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 3.2e-76 290.0 365 42.7
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 1.3e-69 268.1 242 57.9
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.5e-62 244.6 186 59.7
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 1.2e-59 235.0 506 31.2
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 1.1e-52 211.8 194 52.1
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 5.5e-52 209.5 236 43.6
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.7e-40 171.4 127 58.3
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.2e-30 138.7 102 55.9
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 3.7e-24 117.1 202 34.7
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 9.4e-20 102.4 90 56.7
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 2.7e-19 100.9 72 59.7
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 8.0e-19 99.4 64 70.3
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 5.7e-17 93.2 61 67.2
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 4.8e-16 90.1 61 67.2
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 6.3e-16 89.7 60 66.7
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 8.5e-13 79.3 51 70.6
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 2.6e-09 67.8 42 66.7
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 3.4e-09 67.4 46 58.7
Thhalv10011377m.g Eutrema salsugineum HOM05D004057 ORTHO05D004805 7.0e-07 59.7 103 35.9
BcaB04g17588 Brassica carinata HOM05D004057 ORTHO05D004805 1.6e-06 58.5 91 37.4
Nn1g08791 Nelumbo nucifera HOM05D004057 ORTHO05D004805 1.6e-06 58.5 120 31.7
BcaC07g37298 Brassica carinata HOM05D004057 ORTHO05D004805 2.0e-06 58.2 91 37.4
C08p07320 Brassica napus HOM05D004057 ORTHO05D004805 2.0e-06 58.2 91 37.4
BolC8t47573H Brassica oleracea HOM05D004057 ORTHO05D004805 2.0e-06 58.2 91 37.4
Dinv27308 Davidia involucrata HOM05D004057 ORTHO05D004805 2.0e-06 58.2 91 37.4
Aa31LG6G9340 Aethionema arabicum HOM05D004057 ORTHO05D004805 7.7e-06 56.2 91 36.3
FAN20G2710 Fragaria x ananassa HOM05D004057 ORTHO05D004805 7.7e-06 56.2 91 35.2
Nn5g28304 Nelumbo nucifera HOM05D004057 ORTHO05D004805 7.7e-06 56.2 120 31.7
PSO170G0366 Papaver somniferum HOM05D004057 ORTHO05D004805 7.7e-06 56.2 106 30.2
PSO528G0101 Papaver somniferum HOM05D004057 ORTHO05D004805 7.7e-06 56.2 106 30.2
Sed0006403 Sechium edule HOM05D004057 ORTHO05D004805 7.7e-06 56.2 91 36.3


User provided reference genes

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