Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 2573.1 1290 100.0
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 2002.6 1295 78.1
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1987.6 1292 77.3
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1790.4 1292 69.2
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1694.9 1283 68.0
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1678.3 1291 64.7
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1654.0 1262 65.5
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1597.8 1311 62.2
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1594.3 1291 62.7
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1593.6 1291 63.0
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1593.6 1291 63.1
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1578.9 1296 61.1
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1578.5 1311 61.9
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1577.0 1292 62.4
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1574.3 1301 61.9
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1563.9 1304 60.4
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1559.7 1300 59.2
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1557.7 1297 61.4
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1552.7 1300 60.5
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1542.7 1307 60.3
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1542.3 1291 60.7
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1541.9 1274 62.2
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1540.8 1293 60.9
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1535.4 1323 59.0
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1532.7 1293 60.4
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1511.9 1291 59.9
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1509.6 1315 59.8
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1506.9 1292 59.2
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1505.0 1296 59.6
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1503.4 1327 58.2
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1500.3 1308 60.0
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1500.0 1364 57.3
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1500.0 1294 59.2
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1495.3 1293 58.5
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1494.9 1298 57.8
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1491.9 1296 59.0
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1487.2 1294 58.7
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1486.9 1356 57.2
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1484.5 1295 58.6
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1476.8 1295 59.1
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1476.1 1296 58.3
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1470.7 1293 58.5
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1469.9 1297 58.0
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1468.8 1298 58.1
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1467.2 1309 58.7
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1463.4 1299 57.8
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1463.0 1306 57.7
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1461.8 1245 60.7
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1458.7 1299 57.7
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1456.4 1385 54.9
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1452.6 1296 57.6
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1452.2 1298 57.8
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1450.6 1295 58.6
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1446.4 1309 55.5
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1443.7 1418 54.6
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1443.3 1309 57.1
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1442.9 1190 61.4
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1441.4 1297 56.4
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1440.2 1290 56.9
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1434.9 1293 56.9
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1428.7 1297 56.4
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1419.1 1076 64.6
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1416.4 1310 56.2
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1414.4 1294 57.3
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1409.4 1301 56.0
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1408.3 1298 56.4
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1407.9 1301 56.0
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1406.7 1114 62.8
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1406.7 1157 61.4
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1399.4 1307 54.9
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1388.2 1300 55.2
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1387.9 1112 63.0
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1381.7 1206 60.1
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1379.4 1298 55.4
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1376.7 1298 55.4
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1374.8 1299 55.4
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1372.8 1301 55.5
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1371.7 1300 54.8
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1370.9 1299 53.4
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1369.4 1301 55.3
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1364.4 1301 54.7
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1361.3 1315 53.8
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1359.7 1300 54.3
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1358.2 1301 54.4
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1355.1 1293 53.6
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1338.9 1114 61.2
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1328.9 1294 54.5
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1325.8 1299 53.5
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1317.4 1392 52.0
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1305.0 1298 53.6
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1297.7 1291 52.2
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1297.7 1089 60.4
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1285.8 1292 50.7
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1262.7 1273 51.4
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1249.2 1299 52.0
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1246.9 1280 50.9
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1236.5 1330 50.8
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1224.2 1119 58.0
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1210.3 1158 56.3
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1207.6 1082 55.8
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1186.4 1300 49.1
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1122.8 1394 45.6
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.5e-296 1022.7 922 56.8
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 5.5e-264 915.2 848 56.6
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 3.4e-253 879.4 1361 38.0
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 9.8e-253 877.9 648 66.0
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 2.4e-251 873.2 1295 41.3
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 3.9e-249 865.9 1373 38.8
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 5.2e-238 828.9 1183 40.7
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 4.9e-228 795.8 764 53.9
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 1.2e-186 658.3 961 40.4
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 3.4e-181 640.2 656 51.4
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 3.8e-172 610.1 570 54.7
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 2.8e-151 540.8 349 77.4
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.7e-143 515.0 379 68.3
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 3.9e-132 477.2 506 54.0
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 1.0e-116 426.0 462 48.9
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 2.4e-110 404.8 323 59.8
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 7.6e-96 356.7 1076 25.7
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 4.9e-95 354.0 222 72.1
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.4e-88 331.3 431 44.1
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 5.8e-88 330.5 479 42.2
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 2.9e-79 301.6 214 66.8
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 6.5e-79 300.4 214 67.8
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 4.6e-77 294.3 209 66.5
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 3.9e-76 291.2 1060 26.5
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 1.1e-73 283.1 291 50.5
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.1e-69 268.9 163 75.5
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.3e-63 249.6 146 76.7
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 3.0e-60 238.4 732 27.6
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.7e-58 232.6 189 57.1
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 8.5e-55 220.3 991 23.9
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 5.0e-47 194.5 167 60.5
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 8.2e-42 177.2 212 45.3
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 5.0e-39 167.9 143 60.8
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.0e-35 156.0 110 67.3
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.4e-33 149.8 123 54.5
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.2e-32 146.7 210 39.5
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 1.6e-32 146.4 382 30.4
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 2.0e-32 146.0 145 51.0
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.0e-31 143.7 113 64.6
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 1.3e-31 143.3 150 53.3
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.2e-30 138.7 110 74.5
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 1.2e-29 136.7 120 54.2
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 1.0e-28 133.7 192 40.6
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 6.8e-28 131.0 112 73.2
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 2.4e-25 122.5 208 35.6
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 5.7e-19 101.3 88 56.8
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 3.7e-18 98.6 233 33.9
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.7e-18 98.6 85 56.5
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 6.4e-18 97.8 83 59.0
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 7.8e-16 90.9 69 53.6
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 2.8e-13 82.4 211 31.8
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 4.7e-13 81.6 58 62.1
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 1.1e-12 80.5 87 50.6
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 4.4e-11 75.1 57 52.6
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 2.9e-10 72.4 49 69.4
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 9.2e-09 67.4 87 43.7
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 1.6e-08 66.6 81 64.2
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 1.9e-06 59.7 41 56.1


User provided reference genes

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