Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 3.4e-178 628.2 321 100.0
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 8.1e-148 527.3 311 85.2
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 8.9e-147 523.9 316 83.5
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 4.4e-146 521.5 311 84.6
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.3e-145 520.0 312 83.7
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 4.6e-143 511.5 312 82.4
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.7e-142 509.6 311 83.3
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 1.7e-142 509.6 312 82.1
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 3.9e-142 508.4 316 81.3
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 3.9e-142 508.4 312 82.1
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 1.9e-141 506.1 311 80.7
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 7.3e-141 504.2 311 81.7
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 2.8e-140 502.3 311 80.4
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 4.7e-140 501.5 315 79.0
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 1.1e-139 500.4 313 78.9
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 1.2e-138 496.9 312 77.6
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.5e-138 496.5 315 78.7
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 2.6e-138 495.7 312 76.9
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 1.3e-137 493.4 316 77.8
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 2.2e-137 492.7 303 79.5
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 3.5e-135 485.3 311 78.8
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 2.3e-134 482.6 311 77.2
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 2.3e-134 482.6 316 76.9
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.6e-132 476.5 310 74.2
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 6.2e-132 474.6 316 75.0
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 6.2e-132 474.6 316 75.6
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 8.1e-132 474.2 316 75.3
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 1.1e-131 473.8 316 75.3
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.4e-131 473.4 338 72.5
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 2.4e-131 472.6 292 79.1
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 3.1e-131 472.2 319 73.7
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 4.0e-131 471.9 317 75.1
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 4.0e-131 471.9 311 75.2
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 5.3e-131 471.5 316 74.4
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 7.6e-130 467.6 298 75.5
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 9.9e-130 467.2 290 79.7
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 1.3e-129 466.8 316 74.1
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.2e-129 466.1 311 74.9
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 2.2e-129 466.1 316 73.4
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 2.9e-129 465.7 316 74.1
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 2.9e-129 465.7 315 73.0
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 4.9e-129 464.9 311 76.2
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 8.4e-129 464.2 311 74.6
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.1e-128 463.8 308 74.0
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 1.1e-128 463.8 314 72.3
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 1.9e-128 463.0 311 74.0
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 1.9e-128 463.0 311 73.3
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 2.4e-128 462.6 311 73.6
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 4.2e-128 461.8 310 72.9
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 5.4e-128 461.5 311 73.6
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 5.4e-128 461.5 311 74.3
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 9.3e-128 460.7 314 74.2
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 3.5e-127 458.8 311 73.3
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 6.0e-127 458.0 311 73.3
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 7.9e-127 457.6 311 73.0
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 1.8e-126 456.4 311 73.0
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 3.0e-126 455.7 297 74.4
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 3.0e-126 455.7 306 75.8
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 5.1e-126 454.9 309 73.1
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.5e-125 453.4 313 72.2
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 1.9e-125 453.0 313 71.9
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 3.3e-125 452.2 313 71.6
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 5.6e-125 451.4 308 73.1
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 2.8e-124 449.1 312 73.7
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 1.8e-123 446.4 312 69.9
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 4.0e-123 445.3 315 68.9
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 5.3e-123 444.9 309 71.5
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 4.5e-122 441.8 309 71.2
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 7.6e-122 441.0 304 71.7
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 7.6e-122 441.0 311 71.7
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 9.9e-122 440.7 311 71.4
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 1.7e-121 439.9 311 71.4
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 1.7e-121 439.9 286 74.8
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.9e-121 439.1 309 71.2
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 2.9e-121 439.1 309 70.9
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 1.1e-120 437.2 336 67.3
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 1.4e-120 436.8 309 71.5
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.4e-120 436.8 311 72.3
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 1.9e-120 436.4 317 68.8
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 7.1e-120 434.5 317 68.8
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 2.7e-119 432.6 310 68.4
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 1.8e-118 429.9 312 70.5
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 1.8e-118 429.9 289 73.0
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 8.7e-118 427.6 328 66.2
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 8.7e-118 427.6 328 66.2
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 8.7e-118 427.6 328 66.2
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 1.5e-117 426.8 298 68.5
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 3.3e-117 425.6 311 65.9
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 4.3e-117 425.2 313 66.5
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 4.3e-117 425.2 313 66.5
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 5.6e-117 424.9 313 66.5
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 7.4e-117 424.5 313 65.8
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 7.4e-117 424.5 313 66.5
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 7.4e-117 424.5 313 66.5
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 1.3e-116 423.7 313 66.1
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 2.1e-116 422.9 318 65.4
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 2.1e-116 422.9 316 66.8
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 4.8e-116 421.8 315 66.3
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 4.8e-116 421.8 311 67.5
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 8.2e-116 421.0 328 64.9
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 1.4e-115 420.2 316 65.2
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 1.8e-115 419.9 313 66.1
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.1e-115 419.1 338 64.2
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 6.9e-115 417.9 316 64.9
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 2.0e-114 416.4 298 67.4
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 2.6e-114 416.0 311 66.6
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 3.4e-114 415.6 298 67.1
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 3.4e-114 415.6 298 67.1
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 4.5e-114 415.2 298 67.1
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 5.8e-114 414.8 328 64.3
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 3.5e-111 405.6 290 67.9
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 2.3e-110 402.9 256 75.0
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 1.1e-109 400.6 297 67.0
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 2.4e-107 392.9 313 63.6
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 9.0e-107 391.0 330 63.0
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.2e-106 390.6 315 63.2
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 5.9e-106 388.3 267 68.9
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 6.5e-105 384.8 252 72.2
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 3.3e-101 372.5 303 65.3
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 6.3e-100 368.2 311 63.3
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 5.5e-96 355.1 236 75.8
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 3.3e-93 345.9 310 56.8
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 1.4e-88 330.5 220 71.4
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 2.6e-85 319.7 298 54.7
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 5.7e-85 318.5 313 51.4
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.3e-84 317.4 221 71.5
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 5.0e-81 305.4 273 59.0
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 5.0e-81 305.4 311 51.8
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 2.3e-78 296.6 306 50.3
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 1.5e-72 277.3 294 51.4
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 3.6e-71 272.7 312 54.8
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 8.0e-71 271.6 303 47.2
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 7.2e-64 248.4 296 46.3
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 3.6e-47 193.0 175 61.1
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 1.4e-46 191.0 293 38.2
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.4e-37 159.8 104 74.0
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 2.3e-33 147.1 92 81.5
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 6.8e-30 135.6 91 71.4
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 5.8e-29 132.5 92 71.7
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 4.3e-24 116.3 78 73.1
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 4.6e-18 96.3 112 51.8
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 2.5e-16 90.5 89 55.1
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 2.5e-16 90.5 89 55.1
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 8.4e-12 75.5 89 47.2
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 5.4e-11 72.8 97 52.6


User provided reference genes

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