Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 0.0e+00 1429.5 732 100.0
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1119.8 697 83.5
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 3.5e-311 1071.2 695 81.4
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 4.5e-311 1070.8 698 80.4
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 1.0e-307 1059.7 759 75.0
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 5.3e-304 1047.3 698 78.8
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 3.6e-300 1034.6 704 77.3
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 4.6e-300 1034.2 699 77.1
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 1.8e-296 1022.3 706 76.2
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 1.3e-294 1016.1 698 73.2
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 4.2e-293 1011.1 701 75.5
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 4.7e-292 1007.7 701 75.5
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 8.2e-289 996.9 697 75.0
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 1.5e-287 992.6 695 74.1
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 2.6e-287 991.9 696 73.6
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 3.8e-286 988.0 688 74.4
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 1.9e-285 985.7 694 73.6
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 1.2e-284 983.0 698 73.1
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 3.9e-283 978.0 681 73.6
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 5.7e-282 974.2 694 73.5
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 5.7e-282 974.2 689 74.5
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 7.4e-282 973.8 725 71.7
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 1.7e-281 972.6 685 74.0
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 1.1e-280 969.9 689 73.6
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 1.4e-280 969.5 692 72.7
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 7.0e-280 967.2 702 73.1
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 2.6e-279 965.3 725 71.7
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 7.7e-279 963.8 686 73.9
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 1.0e-278 963.4 704 72.4
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 2.2e-278 962.2 696 72.4
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 6.5e-278 960.7 659 75.3
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 6.5e-278 960.7 696 73.7
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 1.5e-277 959.5 717 71.5
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 5.5e-277 957.6 645 76.4
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 1.2e-276 956.4 696 72.6
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 2.7e-276 955.3 698 71.5
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 4.7e-276 954.5 687 72.6
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 8.0e-276 953.7 718 70.5
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 1.0e-275 953.4 776 66.4
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 1.0e-275 953.4 690 71.9
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 1.0e-275 953.4 718 71.3
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 3.0e-275 951.8 707 72.1
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 4.0e-275 951.4 689 72.7
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 8.8e-275 950.3 698 72.2
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 1.5e-274 949.5 691 72.1
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 2.0e-274 949.1 697 72.0
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 2.6e-274 948.7 717 71.4
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 4.4e-274 948.0 696 71.0
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 9.7e-274 946.8 694 72.6
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 1.7e-273 946.0 680 74.1
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 1.7e-273 946.0 709 70.5
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 2.8e-273 945.3 692 71.2
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 4.8e-273 944.5 745 68.3
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 1.1e-272 943.3 702 70.8
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 1.1e-272 943.3 696 73.0
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 1.4e-272 943.0 693 71.9
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 4.1e-272 941.4 753 67.2
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 9.1e-272 940.3 691 71.8
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 2.7e-271 938.7 721 69.3
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 9.4e-269 930.2 736 67.0
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 1.2e-268 929.9 719 69.7
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 2.1e-268 929.1 696 69.1
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 3.6e-268 928.3 653 74.0
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 1.0e-267 926.8 728 68.0
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 3.0e-267 925.2 715 69.4
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 4.0e-267 924.9 727 68.0
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 5.2e-267 924.5 727 68.9
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 1.2e-266 923.3 728 68.1
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 5.7e-266 921.0 715 69.0
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 7.5e-266 920.6 733 67.1
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 7.5e-266 920.6 713 68.2
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 9.8e-266 920.2 738 67.1
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 1.7e-265 919.5 734 66.8
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 2.2e-265 919.1 735 66.7
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.2e-265 919.1 730 68.1
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 2.8e-265 918.7 715 69.0
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 3.7e-265 918.3 743 67.0
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 4.8e-265 917.9 730 67.9
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 8.3e-265 917.1 730 67.9
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 1.8e-264 916.0 728 66.9
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 5.4e-264 914.4 682 69.4
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 7.0e-264 914.1 717 67.1
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 1.2e-263 913.3 756 66.0
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 1.2e-263 913.3 688 71.5
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 1.6e-263 912.9 755 65.2
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 1.6e-263 912.9 754 65.4
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 1.1e-261 906.7 733 66.8
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 1.5e-261 906.4 740 64.9
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 4.2e-261 904.8 729 66.1
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 5.5e-261 904.4 711 68.8
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 2.1e-260 902.5 722 66.6
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 4.7e-260 901.4 737 65.4
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 1.0e-259 900.2 766 63.2
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 8.9e-259 897.1 696 69.1
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 9.8e-258 893.6 735 65.7
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 2.2e-257 892.5 838 60.4
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 4.9e-257 891.3 688 68.0
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 3.1e-256 888.6 716 68.2
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 5.4e-256 887.9 635 73.2
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 7.0e-256 887.5 776 62.6
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 4.5e-255 884.8 651 71.6
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 6.1e-252 874.4 689 69.1
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 1.3e-249 866.7 764 62.3
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.0e-246 857.1 684 65.8
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 1.0e-246 857.1 681 65.9
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 3.9e-246 855.1 733 64.0
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 5.6e-245 851.3 733 63.7
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 1.3e-241 840.1 686 66.2
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.1e-239 832.8 639 67.0
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 1.7e-238 829.7 669 65.2
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 1.1e-237 827.0 665 67.1
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 6.8e-235 817.8 688 63.1
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 3.4e-234 815.5 692 61.6
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 6.6e-230 801.2 582 69.8
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 7.1e-216 754.6 696 56.6
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 1.7e-214 750.0 772 57.3
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 1.7e-214 750.0 543 70.0
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.3e-209 733.8 747 54.1
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.0e-206 724.2 526 70.0
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 2.6e-202 709.5 687 56.3
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 5.5e-192 675.2 631 59.1
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 2.2e-188 663.3 421 78.1
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 6.1e-183 645.2 694 56.1
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 2.5e-176 623.2 781 49.2
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 4.2e-176 622.5 338 86.7
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 9.1e-171 604.7 531 63.8
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.0e-157 560.5 531 61.6
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 5.9e-146 522.3 413 67.8
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 9.5e-144 515.0 707 44.0
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 1.0e-121 441.8 686 40.1
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 9.9e-117 425.2 837 36.8
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 5.8e-109 399.4 442 56.8
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 3.8e-108 396.7 484 52.5
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.9e-96 357.8 257 69.3
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 2.0e-93 347.8 206 78.6
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-89 335.1 214 74.8
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.8e-87 327.4 173 89.0
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.5e-85 320.1 234 67.9
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 2.3e-81 307.8 343 57.4
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 1.3e-76 292.0 875 28.9
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.4e-70 271.9 141 90.1
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 2.0e-56 224.9 128 82.0
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 7.5e-48 196.4 244 51.2
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 2.9e-44 184.5 115 80.9
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 1.9e-43 181.8 146 71.9
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 4.4e-40 170.6 320 38.4
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 4.1e-22 110.9 77 72.7
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 3.0e-20 104.8 79 64.6
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 8.6e-20 103.2 61 77.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.9e-14 85.5 87 50.6
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 7.0e-14 83.6 57 68.4
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 4.6e-13 80.9 87 49.4
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.0e-13 80.5 45 80.0
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 9.5e-11 73.2 98 52.0
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 2.8e-10 71.6 58 63.8
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 6.2e-10 70.5 41 73.2
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.1e-09 69.7 66 48.5
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.6e-08 65.1 47 72.3
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.4e-06 59.3 52 57.7


User provided reference genes

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