Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1919.1 957 100.0
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1489.6 957 78.3
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1400.6 959 73.2
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1390.2 990 72.5
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1388.2 885 76.9
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1385.5 919 74.4
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1376.7 910 74.8
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1370.9 941 72.7
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1367.1 882 75.4
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1365.5 902 73.9
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1361.7 903 74.6
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1356.3 960 72.1
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1353.2 902 74.1
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1352.0 919 73.2
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1351.7 946 71.9
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1350.5 926 73.1
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1349.3 906 74.7
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1347.0 960 71.8
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1343.9 902 73.7
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1343.6 906 73.7
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1343.6 903 73.9
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1342.8 902 73.7
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1329.7 934 72.1
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1329.7 898 73.7
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1329.7 939 71.4
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1329.3 964 69.2
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1325.5 904 72.3
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1325.1 923 72.0
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1323.1 916 72.8
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1323.1 938 71.1
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1321.6 882 74.4
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1321.6 906 73.2
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1321.6 906 72.7
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1319.7 960 70.1
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1316.6 903 72.9
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1316.6 885 73.0
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1316.2 881 73.6
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1315.1 903 72.1
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1313.5 882 73.5
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1311.6 911 71.9
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1310.4 917 71.5
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1309.7 882 73.0
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1309.7 934 70.0
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1308.9 884 73.0
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1308.9 945 69.3
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1308.5 881 73.3
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1307.0 929 70.4
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1306.6 907 71.3
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1302.3 907 71.7
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1301.2 887 72.6
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1300.4 880 72.7
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1297.3 942 70.0
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1293.5 915 71.3
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1288.5 881 73.0
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1286.2 945 69.5
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1286.2 947 69.2
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1286.2 902 70.7
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1281.2 1026 65.0
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1265.0 909 69.9
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1258.8 951 67.7
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1253.8 897 70.1
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1251.9 885 71.4
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1248.4 969 66.5
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1224.9 967 66.4
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1221.5 877 69.3
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1211.8 837 72.0
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1206.4 802 74.8
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1205.3 875 68.2
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1201.8 923 67.2
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1196.8 921 65.9
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1196.4 879 67.9
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1196.4 878 67.7
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1190.6 873 68.0
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1189.9 905 66.0
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1187.9 814 73.5
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1187.2 890 66.2
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1184.9 908 66.1
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1182.9 905 66.0
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1182.5 892 66.3
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1179.5 902 67.5
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1175.6 947 62.6
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1174.1 882 66.7
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1171.0 947 64.1
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1152.5 883 65.7
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1146.3 928 65.2
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1142.9 899 64.2
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1140.9 949 62.2
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1138.6 908 63.9
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1134.8 909 63.5
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1132.9 924 63.2
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1119.0 913 63.5
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1084.7 863 66.0
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1083.6 809 67.2
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 1.9e-309 1065.8 907 61.1
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 1.1e-293 1013.4 767 66.6
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 3.0e-275 952.2 876 54.5
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 2.0e-271 939.5 707 65.9
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 4.4e-266 921.8 914 51.6
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 3.5e-263 912.1 599 74.1
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.9e-249 865.1 626 69.6
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 6.4e-249 864.8 680 65.9
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.8e-244 849.4 603 71.0
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 7.8e-239 831.2 590 71.0
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 5.3e-219 765.4 914 47.7
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 5.3e-203 712.2 443 78.6
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 2.6e-202 709.9 558 64.3
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 9.3e-200 701.4 890 47.8
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.3e-198 697.6 509 69.2
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 8.7e-190 668.3 660 53.6
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 1.4e-187 661.0 696 49.9
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 3.6e-183 646.4 532 62.0
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 8.8e-182 641.7 415 73.5
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 1.3e-164 584.7 399 71.7
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 3.5e-146 523.5 388 70.4
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.5e-117 428.3 269 76.6
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 6.2e-103 379.8 250 76.0
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 1.9e-99 368.2 302 63.9
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.2e-91 340.5 339 55.5
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 4.2e-83 313.9 216 74.1
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 7.4e-80 303.1 238 63.9
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 1.4e-65 255.8 172 70.3
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 6.3e-63 246.9 250 54.0
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 5.0e-52 210.7 223 45.7
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.0e-44 186.4 222 50.9
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 2.3e-36 158.7 139 64.0
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 9.5e-35 153.3 96 77.1
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-26 124.4 271 32.8
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 6.8e-25 120.6 414 23.7
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 1.8e-22 112.5 59 89.8
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 9.5e-19 100.1 58 84.5
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 4.7e-18 97.8 82 58.5
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 3.2e-14 85.1 79 59.5
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 3.4e-08 65.1 200 29.5
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 2.2e-07 62.4 36 83.3
CBR_g45572 Chara braunii HOM05D000785 ORTHO05D000231 5.4e-06 57.8 55 56.4


User provided reference genes

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