Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 2.0e-124 449.1 230 100.0
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 4.5e-100 368.2 230 78.3
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.7e-99 366.3 230 77.8
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 4.2e-98 361.7 236 75.4
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 2.6e-95 352.4 235 77.0
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 7.4e-95 350.9 258 69.4
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 1.7e-94 349.7 231 74.9
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 3.5e-92 342.0 242 72.3
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 7.7e-92 340.9 230 73.5
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 8.5e-91 337.4 243 71.6
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 3.0e-88 328.9 230 71.3
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 1.1e-87 327.0 233 71.2
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 4.4e-87 325.1 237 68.8
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 4.4e-87 325.1 237 68.8
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 4.4e-87 325.1 233 70.8
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 5.7e-87 324.7 237 68.8
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 4.8e-86 321.6 221 71.9
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 4.8e-86 321.6 241 69.3
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 4.8e-86 321.6 239 69.0
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 4.8e-86 321.6 235 69.4
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 6.3e-86 321.2 233 70.8
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 8.2e-86 320.9 215 73.5
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 1.1e-85 320.5 231 68.8
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.1e-85 320.5 235 68.9
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 1.4e-85 320.1 242 66.1
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 1.4e-85 320.1 214 72.9
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 7.0e-85 317.8 231 67.1
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 7.0e-85 317.8 227 67.4
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 9.1e-85 317.4 220 71.4
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 2.0e-84 316.2 233 66.1
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 3.5e-84 315.5 242 67.4
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 4.5e-84 315.1 214 71.0
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 5.9e-84 314.7 220 68.2
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 1.0e-83 313.9 234 70.5
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 1.0e-83 313.9 229 67.7
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 1.7e-83 313.2 230 67.8
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.7e-83 313.2 215 70.2
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 1.7e-83 313.2 232 68.5
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 2.2e-83 312.8 239 67.8
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 2.2e-83 312.8 236 64.8
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.2e-83 312.8 218 69.7
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 3.8e-83 312.0 221 71.9
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 5.0e-83 311.6 239 67.4
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 5.0e-83 311.6 212 69.8
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 6.5e-83 311.2 199 77.4
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.9e-82 309.7 229 65.1
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 3.2e-82 308.9 229 68.1
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 3.2e-82 308.9 220 66.4
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 4.2e-82 308.5 229 67.2
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 4.2e-82 308.5 194 72.7
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 7.2e-82 307.8 220 67.3
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 1.2e-81 307.0 258 63.6
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 2.1e-81 306.2 195 72.8
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 4.7e-81 305.1 228 65.8
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 1.4e-80 303.5 194 73.7
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 1.4e-80 303.5 223 68.2
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 2.3e-80 302.8 224 67.4
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 5.2e-80 301.6 230 64.8
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 8.8e-80 300.8 233 65.2
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 1.2e-79 300.4 240 65.0
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 2.0e-79 299.7 235 64.7
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 3.3e-79 298.9 240 63.8
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 3.3e-79 298.9 240 63.3
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 4.4e-79 298.5 236 66.5
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 7.5e-79 297.7 208 68.8
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 9.7e-79 297.4 246 62.2
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 1.3e-78 297.0 238 61.8
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.3e-78 297.0 230 63.5
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 1.3e-78 297.0 212 65.1
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 1.7e-78 296.6 241 63.5
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 2.2e-78 296.2 188 73.9
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 4.8e-78 295.0 197 70.1
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 4.8e-78 295.0 222 65.3
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.4e-77 293.5 241 62.2
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 1.8e-77 293.1 222 63.5
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 2.4e-77 292.7 188 71.8
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 2.4e-77 292.7 188 71.8
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 3.1e-77 292.4 229 62.4
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 5.3e-77 291.6 236 61.9
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 5.3e-77 291.6 202 68.3
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 9.1e-77 290.8 188 71.8
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 2.0e-76 289.7 241 61.4
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 2.0e-76 289.7 216 65.3
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 2.0e-76 289.7 229 65.9
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.5e-76 288.9 241 61.8
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 3.5e-76 288.9 217 65.0
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 4.5e-76 288.5 231 64.1
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.5e-76 288.5 220 64.1
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 5.9e-76 288.1 188 70.7
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 5.9e-76 288.1 217 64.5
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 7.7e-76 287.7 252 59.9
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 7.7e-76 287.7 236 63.1
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 6.5e-75 284.6 238 60.1
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 6.5e-75 284.6 238 60.1
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 1.1e-74 283.9 238 60.1
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.2e-74 282.3 259 57.9
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 3.2e-74 282.3 190 72.1
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 4.2e-74 282.0 238 59.7
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 4.2e-74 282.0 241 58.1
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 9.4e-74 280.8 235 60.4
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.2e-73 280.4 262 56.9
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 1.6e-73 280.0 232 61.2
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 2.1e-73 279.6 242 57.9
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.6e-73 278.9 163 82.8
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 3.6e-73 278.9 190 71.6
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 8.0e-73 277.7 230 60.0
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 8.3e-70 267.7 216 61.1
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 2.0e-68 263.1 165 75.8
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 2.7e-68 262.7 293 51.9
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 4.5e-68 261.9 189 64.0
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 4.5e-68 261.9 186 69.4
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 5.9e-68 261.5 217 62.7
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 4.2e-66 255.4 217 57.1
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 9.5e-66 254.2 363 43.8
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 2.3e-64 249.6 180 67.8
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 4.4e-63 245.4 214 57.5
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 7.5e-63 244.6 186 57.5
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 3.1e-61 239.2 201 58.7
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 1.2e-60 237.3 184 56.0
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 3.2e-53 212.6 183 54.1
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 1.1e-48 197.6 183 53.0
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 7.8e-44 181.4 131 61.1
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 5.1e-43 178.7 100 83.0
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 2.1e-41 173.3 101 77.2
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 8.9e-40 167.9 127 59.8
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 2.0e-31 140.2 86 75.6
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 1.5e-23 114.0 166 40.4
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 6.4e-22 108.6 64 73.4
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.4e-21 107.5 185 29.7
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 7.1e-21 105.1 183 30.6
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 9.3e-21 104.8 61 80.3
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 6.0e-20 102.1 180 28.3
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 2.5e-18 96.7 237 25.7
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 7.3e-18 95.1 184 26.6
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 1.3e-17 94.4 215 26.0
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.6e-17 94.0 237 25.3
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 2.8e-17 93.2 244 26.2
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 8.1e-17 91.7 183 30.6
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 1.1e-16 91.3 228 27.6
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 1.4e-16 90.9 184 23.4
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 1.8e-16 90.5 183 24.0
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 3.1e-16 89.7 164 28.0
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 3.1e-16 89.7 180 27.2
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 3.1e-16 89.7 163 31.9
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 4.0e-16 89.4 180 26.7
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 4.0e-16 89.4 177 26.6
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 4.0e-16 89.4 186 29.6
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 6.9e-16 88.6 180 26.7
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 9.0e-16 88.2 223 27.4
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 9.0e-16 88.2 181 28.2
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 1.2e-15 87.8 178 26.4
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.2e-15 87.8 181 28.2
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 1.5e-15 87.4 181 28.2
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 2.6e-15 86.7 180 26.1
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 4.5e-15 85.9 180 25.6
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 4.5e-15 85.9 187 27.3
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 7.6e-15 85.1 182 25.3
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 9.9e-15 84.7 184 24.5
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 1.3e-14 84.3 179 25.7
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 8.4e-14 81.6 178 25.8
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 2.4e-13 80.1 190 22.6
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 2.4e-13 80.1 180 25.6
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 2.4e-13 80.1 185 27.6
MSTRG.18942 Avicennia marina HOM05D005727 ORTHO05D087893 4.2e-13 79.3 67 58.2
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 5.4e-13 79.0 180 25.0
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 9.3e-13 78.2 193 25.4
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 9.3e-13 78.2 193 25.4
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 9.3e-13 78.2 196 26.0
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.6e-12 77.4 165 26.7
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 4.6e-12 75.9 191 25.1
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 4.6e-12 75.9 191 25.1
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 6.0e-12 75.5 195 25.6
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 1.1e-10 71.2 191 25.1
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 1.3e-09 67.8 193 22.3
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 1.3e-09 67.8 37 81.1
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 2.8e-09 66.6 178 25.3
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.1e-08 64.7 40 77.5
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 1.8e-08 63.9 135 23.0


User provided reference genes

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