Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.1e-311 1072.4 537 100.0
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 1.0e-232 810.1 567 72.5
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 4.7e-225 784.6 457 84.5
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 3.0e-224 781.9 480 80.8
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 2.0e-223 779.2 465 82.6
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.6e-223 778.9 462 83.1
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 1.3e-222 776.5 491 79.0
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 2.9e-222 775.4 530 74.5
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 6.3e-222 774.2 520 75.4
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.1e-221 773.5 459 83.2
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 1.1e-221 773.5 476 80.9
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 3.2e-221 771.9 528 74.8
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 7.0e-221 770.8 472 81.4
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 7.0e-221 770.8 491 78.8
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 7.0e-221 770.8 491 79.4
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 1.2e-220 770.0 491 79.2
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.5e-220 768.5 450 83.8
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 5.9e-220 767.7 537 73.0
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 1.0e-219 766.9 469 81.2
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 2.3e-219 765.8 450 83.8
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 5.0e-219 764.6 461 82.6
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.6e-219 764.2 490 79.0
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 8.6e-219 763.8 454 82.8
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.5e-218 763.1 479 80.2
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 1.9e-218 762.7 454 83.5
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.6e-217 759.6 518 73.7
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 2.1e-217 759.2 515 76.1
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 2.1e-217 759.2 463 80.3
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 2.8e-217 758.8 463 81.4
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 6.1e-217 757.7 451 81.6
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 6.1e-217 757.7 476 80.5
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 1.4e-216 756.5 538 72.7
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 1.8e-216 756.1 432 84.7
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 5.2e-216 754.6 544 71.7
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 8.9e-216 753.8 462 79.2
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 1.2e-215 753.4 437 84.2
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 1.2e-215 753.4 468 79.9
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.0e-215 752.7 462 80.3
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 7.5e-215 750.7 442 82.8
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 1.3e-214 750.0 461 79.8
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 3.7e-214 748.4 497 76.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 8.3e-214 747.3 443 82.6
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 1.9e-213 746.1 439 83.1
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 1.9e-213 746.1 441 82.5
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 3.2e-213 745.3 457 79.6
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.1e-213 745.0 491 76.8
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.4e-213 744.6 443 82.6
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 5.4e-213 744.6 433 84.5
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 7.0e-213 744.2 433 83.8
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 9.2e-213 743.8 443 83.1
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 1.2e-212 743.4 461 77.9
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 6.0e-212 741.1 433 82.7
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 1.3e-211 740.0 465 78.9
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 3.9e-211 738.4 433 82.2
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 5.0e-211 738.0 450 80.4
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 8.6e-211 737.3 425 84.0
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 1.1e-210 736.9 462 78.8
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 1.9e-210 736.1 469 80.2
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 4.3e-210 734.9 447 80.3
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 5.6e-210 734.6 449 80.6
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 9.5e-210 733.8 419 84.7
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 2.8e-209 732.3 425 83.3
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 2.8e-209 732.3 450 79.8
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 3.6e-209 731.9 473 77.4
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.4e-208 729.9 540 70.9
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 1.4e-208 729.9 432 81.7
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 2.3e-208 729.2 445 80.9
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 2.3e-208 729.2 454 79.5
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.3e-208 729.2 471 77.9
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 2.3e-208 729.2 419 83.8
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 3.1e-208 728.8 473 77.0
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 5.2e-208 728.0 515 72.6
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 6.8e-208 727.6 533 71.7
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 8.9e-208 727.2 425 83.1
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 2.6e-207 725.7 525 71.6
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 3.4e-207 725.3 426 83.3
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 7.5e-207 724.2 529 70.7
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 7.5e-207 724.2 425 81.6
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 2.9e-206 722.2 433 80.8
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 4.9e-206 721.5 463 76.9
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 4.9e-206 721.5 463 76.9
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 4.9e-206 721.5 421 83.6
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 8.3e-206 720.7 433 82.2
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.9e-205 719.5 435 81.6
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 7.1e-205 717.6 485 74.2
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 1.6e-204 716.5 450 78.7
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 3.9e-203 711.8 433 80.4
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 8.6e-203 710.7 441 77.8
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 1.9e-202 709.5 433 79.9
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 4.3e-202 708.4 421 81.5
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 7.3e-202 707.6 421 81.5
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 2.8e-201 705.7 440 78.2
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 2.8e-201 705.7 498 71.1
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 8.1e-201 704.1 441 78.0
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.1e-200 703.7 496 71.8
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 4.0e-200 701.8 425 78.8
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 8.9e-200 700.7 432 78.9
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 1.5e-199 699.9 421 80.8
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 7.6e-199 697.6 421 80.5
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 1.3e-198 696.8 421 80.3
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 3.7e-198 695.3 444 76.4
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 4.9e-198 694.9 421 80.5
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 4.9e-198 694.9 421 80.5
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.1e-197 693.7 446 76.2
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 1.4e-197 693.3 441 77.3
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 1.2e-196 690.3 446 75.6
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 2.7e-196 689.1 474 73.4
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 4.6e-196 688.3 441 76.2
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 1.0e-195 687.2 428 77.1
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 1.7e-195 686.4 421 79.3
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 6.8e-192 674.5 403 82.6
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.9e-189 666.4 435 77.2
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 9.3e-189 664.1 394 82.5
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.2e-183 647.1 428 73.1
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.4e-181 640.2 477 66.2
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 5.1e-179 631.7 426 70.4
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 3.4e-175 619.0 479 64.5
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 1.1e-173 614.0 428 68.5
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 2.5e-170 602.8 362 80.9
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 6.3e-161 571.6 326 86.8
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.6e-151 539.7 320 82.8
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 2.6e-151 539.7 384 72.1
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 7.9e-148 528.1 302 85.8
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 9.1e-144 514.6 481 55.9
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 2.0e-143 513.5 317 79.5
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 4.2e-141 505.8 426 59.9
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 7.2e-141 505.0 326 75.8
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 8.8e-139 498.0 297 83.8
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.7e-137 493.8 432 57.9
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.3e-129 465.3 297 78.8
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 9.4e-125 451.4 314 75.8
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 3.4e-122 443.0 272 79.0
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 2.7e-116 423.3 424 54.5
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.2e-106 391.3 428 46.0
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 1.6e-100 370.9 242 78.1
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.8e-91 340.9 432 42.8
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.6e-79 301.2 175 81.1
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 2.7e-71 273.9 355 42.8
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.6e-55 221.5 130 79.2
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 3.9e-54 216.9 176 66.5
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.0e-46 192.2 190 52.1
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.9e-45 188.0 119 70.6
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 5.7e-45 186.4 124 74.2
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 3.1e-43 180.6 210 53.8
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 6.9e-43 179.5 131 67.2
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 4.1e-35 153.7 89 75.3
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 7.7e-34 149.4 90 80.0
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 6.9e-27 126.3 78 75.6
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.2e-26 125.6 86 66.3
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.2e-26 125.6 86 66.3
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.3e-25 122.1 109 56.9
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 1.7e-25 121.7 79 68.4
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 5.0e-25 120.2 79 68.4
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 1.9e-24 118.2 79 67.1
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 9.4e-24 115.9 76 67.1
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 2.8e-20 104.4 82 68.3
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 4.8e-20 103.6 254 31.1
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 6.3e-20 103.2 120 48.3
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 6.3e-20 103.2 120 48.3
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 2.4e-19 101.3 72 65.3
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 1.1e-16 92.4 53 83.0


User provided reference genes

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