Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.5006 Avicennia marina HOM05D006647 ORTHO05D008232 3.4e-155 551.6 274 100.0
MSTRG.5008 Avicennia marina HOM05D006647 ORTHO05D008232 9.7e-110 400.6 241 81.7
Dinv09377 Davidia involucrata HOM05D006647 ORTHO05D008232 2.2e-101 372.9 267 72.7
SalBow4G2297 Salvia bowleyana HOM05D006647 ORTHO05D008232 3.2e-97 359.0 334 59.9
Haze_03236 Corylus avellana HOM05D006647 ORTHO05D008232 9.5e-97 357.5 274 69.7
GSVIVG01032057001 Vitis vinifera HOM05D006647 ORTHO05D008232 1.2e-96 357.1 265 70.2
Cfa010738 Carpinus fangiana HOM05D006647 ORTHO05D008232 3.6e-96 355.5 274 69.7
Manes.07G004100 Manihot esculenta HOM05D006647 ORTHO05D008232 3.6e-96 355.5 267 69.7
Ciclev10032303m.g Citrus clementina HOM05D006647 ORTHO05D008232 4.7e-96 355.1 278 66.2
Atru.chr11.2639 Acer truncatum HOM05D006647 ORTHO05D008232 6.1e-96 354.8 274 68.6
Migut.N01481 Erythranthe guttata HOM05D006647 ORTHO05D008232 2.3e-95 352.8 253 71.5
CiPaw.13G002900 Carya illinoinensis HOM05D006647 ORTHO05D008232 9.8e-94 347.4 272 68.4
TAR633G0758 Trochodendron aralioides HOM05D006647 ORTHO05D008232 9.8e-94 347.4 269 69.5
Nn2g15502 Nelumbo nucifera HOM05D006647 ORTHO05D008232 1.3e-93 347.1 272 68.4
SGA_v2.0_scaffold4G02252 Striga asiatica HOM05D006647 ORTHO05D008232 1.3e-93 347.1 267 70.4
Sabra09G0047700 Salix brachista HOM05D006647 ORTHO05D008232 2.8e-93 345.9 259 69.5
Lj9A629T102 Lonicera japonica HOM05D006647 ORTHO05D008232 5.4e-92 341.7 223 74.4
Peaxi162Scf00428g00819 Petunia axillaris HOM05D006647 ORTHO05D008232 5.4e-92 341.7 267 68.2
arahy.Tifrunner.gnm1.ann1.BH4E67 Arachis hypogaea HOM05D006647 ORTHO05D008232 9.2e-92 340.9 272 67.3
Potri.009G064500 Populus trichocarpa HOM05D006647 ORTHO05D008232 9.2e-92 340.9 264 68.2
arahy.Tifrunner.gnm1.ann1.K7GJAS Arachis hypogaea HOM05D006647 ORTHO05D008232 1.2e-91 340.5 271 67.2
Sc11g0009300 Simmondsia chinensis HOM05D006647 ORTHO05D008232 2.0e-91 339.7 272 65.8
THA.LOC104801981 Tarenaya hassleriana HOM05D006647 ORTHO05D008232 2.0e-91 339.7 268 68.3
Nitab4.5_0011905g0020 Nicotiana tabacum HOM05D006647 ORTHO05D008232 3.5e-91 339.0 265 67.2
TWI73G0313 Tripterygium wilfordii HOM05D006647 ORTHO05D008232 7.8e-91 337.8 272 65.8
Hma1.2p1_0929F.1_g237940 Hydrangea macrophylla HOM05D006647 ORTHO05D008232 1.0e-90 337.4 211 77.3
CSS0029691 Camellia sinensis var. sinensis HOM05D006647 ORTHO05D008232 1.7e-90 336.7 276 65.9
Thecc.01G413900 Theobroma cacao HOM05D006647 ORTHO05D008232 2.9e-90 335.9 269 64.7
Lj5g0023478 Lotus japonicus HOM05D006647 ORTHO05D008232 5.0e-90 335.1 269 64.7
unitig_0.g1579 Utricularia gibba HOM05D006647 ORTHO05D008232 5.0e-90 335.1 296 61.1
RcHm_v2.0_Chr1g0314911 Rosa chinensis HOM05D006647 ORTHO05D008232 1.1e-89 334.0 267 67.8
FAN03G0714 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.5e-89 333.6 272 65.8
FvH4_7g00690 Fragaria vesca HOM05D006647 ORTHO05D008232 3.3e-89 332.4 272 65.4
DCAR_006301 Daucus carota HOM05D006647 ORTHO05D008232 4.3e-89 332.0 226 74.3
Carub.0005s3017 Capsella rubella HOM05D006647 ORTHO05D008232 7.3e-89 331.3 265 63.8
QL04p005221 Quercus lobata HOM05D006647 ORTHO05D008232 9.5e-89 330.9 270 65.9
Solyc01g086900.4 Solanum lycopersicum HOM05D006647 ORTHO05D008232 1.2e-88 330.5 270 65.6
VMungo1080G0119 Vigna mungo HOM05D006647 ORTHO05D008232 1.2e-88 330.5 265 67.2
PSO339G5555 Papaver somniferum HOM05D006647 ORTHO05D008232 1.6e-88 330.1 265 64.5
Nitab4.5_0001542g0050 Nicotiana tabacum HOM05D006647 ORTHO05D008232 2.8e-88 329.3 268 65.3
CANSAT01G0516 Cannabis sativa HOM05D006647 ORTHO05D008232 3.6e-88 328.9 269 63.6
Lalb_Chr25g0283211 Lupinus albus HOM05D006647 ORTHO05D008232 3.6e-88 328.9 272 62.5
HanXRQChr01g0017301 Helianthus annuus HOM05D006647 ORTHO05D008232 4.7e-88 328.6 264 65.9
MD07G1006600 Malus domestica HOM05D006647 ORTHO05D008232 4.7e-88 328.6 229 73.4
Sopen01g033910 Solanum pennellii HOM05D006647 ORTHO05D008232 4.7e-88 328.6 270 65.2
Actinidia20680 Actinidia chinensis HOM05D006647 ORTHO05D008232 1.0e-87 327.4 267 66.7
Eucgr.G03394 Eucalyptus grandis HOM05D006647 ORTHO05D008232 2.3e-87 326.2 225 71.6
Sp1g00030 Schrenkiella parvula HOM05D006647 ORTHO05D008232 4.0e-87 325.5 266 63.2
Sp5g00020 Schrenkiella parvula HOM05D006647 ORTHO05D008232 4.0e-87 325.5 266 63.2
AL5G46420 Arabidopsis lyrata HOM05D006647 ORTHO05D008232 8.9e-87 324.3 265 62.6
Migut.O00562 Erythranthe guttata HOM05D006647 ORTHO05D008232 8.9e-87 324.3 187 84.0
Prupe.2G009700 Prunus persica HOM05D006647 ORTHO05D008232 8.9e-87 324.3 280 63.9
Psat5g204920 Pisum sativum HOM05D006647 ORTHO05D008232 1.2e-86 323.9 260 64.6
FAN06G3601 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.5e-86 323.6 213 73.2
FAN10G4164 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.5e-86 323.6 213 73.2
Glyma.08G152700 Glycine max HOM05D006647 ORTHO05D008232 9.8e-86 320.9 272 63.2
Phvul.005G036700 Phaseolus vulgaris HOM05D006647 ORTHO05D008232 9.8e-86 320.9 271 64.2
CsaV3_7G031240 Cucumis sativus L. HOM05D006647 ORTHO05D008232 3.7e-85 318.9 274 63.5
AUR62009372 Chenopodium quinoa HOM05D006647 ORTHO05D008232 4.9e-85 318.5 209 71.8
PSO384G2587 Papaver somniferum HOM05D006647 ORTHO05D008232 1.4e-84 317.0 265 62.6
BcaC01g03971 Brassica carinata HOM05D006647 ORTHO05D008232 1.8e-84 316.6 254 65.4
TPR.G12287 Trifolium pratense HOM05D006647 ORTHO05D008232 4.1e-84 315.5 270 60.7
AT5G26880 Arabidopsis thaliana HOM05D006647 ORTHO05D008232 5.4e-84 315.1 210 71.4
Duzib138G0958 Durio zibethinus HOM05D006647 ORTHO05D008232 7.0e-84 314.7 265 62.3
Thhalv10006150m.g Eutrema salsugineum HOM05D006647 ORTHO05D008232 1.2e-83 313.9 217 71.0
CARHR291410 Cardamine hirsuta HOM05D006647 ORTHO05D008232 1.6e-83 313.5 265 63.4
Medtr3g027870 Medicago truncatula HOM05D006647 ORTHO05D008232 1.0e-82 310.8 275 60.0
BraA03t12997Z Brassica rapa HOM05D006647 ORTHO05D008232 1.3e-82 310.5 245 65.7
C03p46630 Brassica napus HOM05D006647 ORTHO05D008232 1.5e-81 307.0 184 79.3
BolC3t16926H Brassica oleracea HOM05D006647 ORTHO05D008232 1.9e-81 306.6 232 68.1
Gohir.A08G145600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 3.3e-81 305.8 227 66.1
Gohir.D08G166600 Gossypium hirsutum HOM05D006647 ORTHO05D008232 5.6e-81 305.1 227 66.1
Gorai.004G174000 Gossypium raimondii HOM05D006647 ORTHO05D008232 7.3e-81 304.7 236 65.7
A03p38460 Brassica napus HOM05D006647 ORTHO05D008232 9.5e-81 304.3 237 67.5
Hund20080 Selenicereus undatus HOM05D006647 ORTHO05D008232 9.5e-81 304.3 279 59.9
Cc02_g28430 Coffea canephora HOM05D006647 ORTHO05D008232 2.8e-80 302.8 175 82.3
COL.COLO4_23898 Corchorus olitorius HOM05D006647 ORTHO05D008232 2.8e-80 302.8 210 69.0
ATR0605G070 Amborella trichopoda HOM05D006647 ORTHO05D008232 3.6e-80 302.4 209 67.5
EL10Ac2g04310 Beta vulgaris HOM05D006647 ORTHO05D008232 6.2e-80 301.6 221 67.0
HPP92_015763 Vanilla planifolia HOM05D006647 ORTHO05D008232 6.2e-80 301.6 199 72.9
MBI01_g36432_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 1.1e-79 300.8 245 64.5
Sed0007518 Sechium edule HOM05D006647 ORTHO05D008232 1.1e-79 300.8 266 60.9
Rhsim01G0130800 Rhododendron simsii HOM05D006647 ORTHO05D008232 1.2e-78 297.4 342 51.5
Lsat_1_v5_gn_1_109441 Lactuca sativa HOM05D006647 ORTHO05D008232 1.1e-73 280.8 211 66.8
ClCG09G004320 Citrullus lanatus HOM05D006647 ORTHO05D008232 2.1e-72 276.6 271 58.3
MBI04_g14259_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 6.0e-67 258.5 238 58.8
CDE06G2349 Ceratophyllum demersum HOM05D006647 ORTHO05D008232 1.3e-66 257.3 154 76.0
AUR62023053 Chenopodium quinoa HOM05D006647 ORTHO05D008232 5.6e-65 251.9 220 59.1
Mapoly0078s0003 Marchantia polymorpha HOM05D006647 ORTHO05D008232 5.6e-65 251.9 197 61.4
Pp3c8_11960 Physcomitrium patens HOM05D006647 ORTHO05D008232 2.4e-60 236.5 201 55.7
ECA248G3327 Erigeron canadensis HOM05D006647 ORTHO05D008232 4.1e-60 235.7 189 64.6
AagrBONN_evm.TU.Sc2ySwM_362.154 Anthoceros agrestis HOM05D006647 ORTHO05D008232 7.1e-60 235.0 174 63.8
A03p38500 Brassica napus HOM05D006647 ORTHO05D008232 2.1e-59 233.4 189 64.0
CBR_g41537 Chara braunii HOM05D006647 ORTHO05D008232 9.6e-57 224.6 170 64.7
Pp3c23_8130 Physcomitrium patens HOM05D006647 ORTHO05D008232 1.4e-55 220.7 167 61.1
vmacro21178 Vaccinium macrocarpon HOM05D006647 ORTHO05D008232 3.1e-55 219.5 245 51.8
SMO351G0607 Selaginella moellendorffii HOM05D006647 ORTHO05D008232 3.4e-54 216.1 157 63.7
MELO3C023534.2 Cucumis melo HOM05D006647 ORTHO05D008232 1.6e-51 207.2 134 70.1
Os08g0506500 Oryza sativa ssp. japonica HOM05D006647 ORTHO05D008232 1.5e-49 200.7 247 49.8
PGR031G3323 Punica granatum HOM05D006647 ORTHO05D008232 7.3e-49 198.4 235 54.0
Oeu010354.1 Olea europaea HOM05D006647 ORTHO05D008232 4.8e-48 195.7 110 81.8
QL04p005246 Quercus lobata HOM05D000030 ORTHO05D008232 5.3e-47 192.2 196 53.6
PGSC0003DMG400006881 Solanum tuberosum HOM05D006647 ORTHO05D008232 1.7e-45 187.2 113 77.9
FAN01G1843 Fragaria x ananassa HOM05D006647 ORTHO05D008232 8.4e-45 184.9 157 63.7
FAN01G0876 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.9e-44 183.7 178 58.4
Cpa.g.sc234.12 Carica papaya HOM05D006647 ORTHO05D008232 2.1e-43 180.3 111 77.5
MCO06G107 Micromonas commoda HOM05D006647 ORTHO05D008232 2.1e-43 180.3 169 55.6
Cre10.g417650 Chlamydomonas reinhardtii HOM05D006647 ORTHO05D008232 1.8e-42 177.2 171 52.0
BcaB01g01017 Brassica carinata HOM05D006647 ORTHO05D008232 7.6e-38 161.8 107 72.0
BcaB04g18808 Brassica carinata HOM05D006647 ORTHO05D008232 7.6e-38 161.8 107 72.0
Aa31LG10G17440 Aethionema arabicum HOM05D006647 ORTHO05D008232 1.3e-37 161.0 106 75.5
Zm00001eb034920 Zea mays HOM05D006647 ORTHO05D008232 2.2e-37 160.2 124 61.3
Cc00_g30670 Coffea canephora HOM05D006647 ORTHO05D008232 7.1e-36 155.2 87 82.8
Ca_26823_v3 Cicer arietinum L. HOM05D006647 ORTHO05D008232 1.3e-34 151.0 81 82.7
FAN01G1906 Fragaria x ananassa HOM05D006647 ORTHO05D008232 1.9e-33 147.1 93 76.3
Ah.10g029810 Amaranthus hybridus HOM05D006647 ORTHO05D008232 3.7e-32 142.9 93 71.0
Cpa.g.sc234.13 Carica papaya HOM05D006647 ORTHO05D008232 1.1e-28 131.3 138 58.7
MBI04_g09488_MAGBIO Magnolia biondii HOM05D006647 ORTHO05D008232 4.5e-22 109.4 63 77.8
PRCOL_00005260 Prasinoderma coloniale HOM05D006647 ORTHO05D008232 1.9e-20 104.0 189 37.6
Aa31LG10G17450 Aethionema arabicum HOM05D006647 ORTHO05D008232 2.1e-19 100.5 164 42.1


User provided reference genes

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