Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 0.0e+00 1092.0 703 100.0
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 2.9e-222 775.8 705 79.6
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 3.9e-211 738.8 703 67.6
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 2.0e-199 699.9 471 80.0
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.2e-191 674.1 705 65.0
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.5e-186 656.4 535 67.1
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 3.3e-186 656.0 510 69.4
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 3.1e-184 649.4 511 69.9
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 8.4e-182 641.3 706 69.0
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 2.5e-178 629.8 743 61.2
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.8e-176 623.6 490 70.2
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 4.0e-176 622.5 547 64.4
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.6e-175 618.2 523 65.2
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 4.2e-173 612.5 505 66.7
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.8e-171 607.1 511 64.0
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 3.0e-171 606.3 515 64.9
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 8.7e-171 604.7 479 67.8
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.5e-170 604.0 502 66.7
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.9e-170 603.6 516 63.8
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 9.6e-170 601.3 479 67.6
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 2.1e-169 600.1 513 64.1
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 4.8e-169 599.0 499 64.9
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 6.3e-169 598.6 480 65.2
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 6.3e-169 598.6 520 64.0
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 8.2e-169 598.2 495 66.3
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 2.4e-168 596.7 495 66.1
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 5.3e-168 595.5 496 64.9
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 6.9e-168 595.1 517 63.4
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.5e-167 594.0 549 60.3
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 5.9e-167 592.0 514 60.9
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 5.9e-167 592.0 520 64.0
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 7.6e-167 591.7 469 67.4
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 7.6e-167 591.7 520 63.7
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.3e-166 590.9 453 69.1
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 1.7e-166 590.5 514 62.1
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.7e-166 590.5 498 64.3
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 2.9e-166 589.7 497 65.0
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.8e-166 589.3 495 65.5
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 6.5e-166 588.6 496 64.5
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 6.5e-166 588.6 489 65.2
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 8.4e-166 588.2 517 61.1
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 2.5e-165 586.6 519 62.8
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.2e-165 586.3 495 65.5
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 3.2e-165 586.3 538 60.8
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 9.3e-165 584.7 497 65.4
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.6e-164 583.9 379 80.5
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 2.7e-164 583.2 521 63.3
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 4.6e-164 582.4 480 65.4
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 7.9e-164 581.6 499 63.5
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.0e-163 579.7 720 57.1
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.3e-162 576.2 479 65.6
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 4.3e-162 575.9 479 65.6
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.4e-162 575.1 479 65.6
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 9.7e-162 574.7 454 67.8
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 9.7e-162 574.7 499 63.9
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 3.7e-161 572.8 538 61.5
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 4.8e-161 572.4 495 63.2
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 4.8e-161 572.4 497 64.2
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 2.4e-160 570.1 522 62.3
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.2e-159 567.8 502 63.3
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.0e-159 567.0 482 64.5
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 7.7e-159 565.1 532 61.1
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 7.7e-159 565.1 477 65.2
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 7.7e-159 565.1 518 62.7
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.2e-158 563.5 477 63.5
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.9e-157 560.5 524 59.5
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.9e-157 560.5 432 69.9
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 3.2e-157 559.7 457 64.8
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 3.2e-157 559.7 520 61.7
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.2e-156 557.8 512 62.7
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 6.1e-156 555.4 505 62.6
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 6.1e-156 555.4 514 60.5
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 2.3e-155 553.5 528 58.9
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 6.7e-155 552.0 449 63.9
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.5e-154 550.8 513 61.4
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.5e-154 550.8 418 68.2
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 2.0e-154 550.4 479 64.1
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.5e-154 550.1 518 58.9
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 3.3e-154 549.7 479 61.6
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 1.3e-153 547.7 479 61.6
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 6.3e-153 545.4 428 67.3
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 2.4e-152 543.5 520 59.2
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 5.3e-152 542.3 404 67.6
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 3.4e-151 539.7 487 61.0
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.7e-150 537.3 502 61.8
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.7e-150 537.3 478 62.8
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.1e-149 534.6 430 65.1
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 2.5e-149 533.5 509 58.9
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 7.2e-149 531.9 514 58.8
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 3.6e-148 529.6 525 57.5
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 4.7e-148 529.3 418 65.3
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.3e-145 521.2 453 61.1
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 2.2e-145 520.4 481 60.7
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 2.6e-143 513.5 462 61.0
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 4.7e-140 502.7 478 57.7
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 4.7e-140 502.7 430 60.2
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 4.0e-139 499.6 385 65.2
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 2.0e-138 497.3 431 60.3
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.6e-138 496.9 389 66.6
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.4e-136 490.3 503 54.1
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 7.0e-136 488.8 451 58.8
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 7.7e-135 485.3 457 56.9
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 1.3e-134 484.6 396 65.7
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.0e-131 473.0 448 58.0
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 1.2e-130 471.5 451 58.1
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 1.5e-130 471.1 393 66.7
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 4.8e-129 466.1 523 53.9
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 2.2e-126 457.2 407 59.5
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 6.5e-126 455.7 530 52.3
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 1.2e-122 444.9 409 58.2
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 9.8e-114 415.2 446 53.8
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 8.0e-108 395.6 333 66.1
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 4.9e-105 386.3 328 62.2
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.9e-104 384.4 438 51.6
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.5e-103 380.2 284 68.3
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 8.1e-100 369.0 347 56.5
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 4.4e-98 363.2 356 55.6
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 2.9e-97 360.5 492 47.0
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 2.7e-95 354.0 421 48.7
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 7.6e-82 309.3 217 72.4
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 4.9e-81 306.6 311 59.2
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 1.1e-80 305.4 418 46.9
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.4e-80 305.1 371 49.9
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.3e-69 267.3 466 39.7
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 3.6e-68 263.8 379 43.0
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 4.0e-67 260.4 218 67.9
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.8e-65 253.8 541 35.5
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.1e-64 252.3 205 61.5
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 7.1e-64 249.6 188 68.6
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 7.4e-61 239.6 400 40.2
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 4.2e-48 197.2 194 53.1
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 4.6e-47 193.7 165 60.0
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.6e-39 168.7 209 45.5
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.4e-38 165.6 152 63.2
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 1.4e-38 165.6 316 60.1
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 7.0e-27 126.7 94 64.9
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 1.1e-24 119.4 314 59.9
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 8.0e-23 113.2 87 66.7
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 4.0e-22 110.9 423 26.7
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 6.7e-22 110.2 115 51.3
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 8.8e-22 109.8 105 54.3
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 2.6e-21 108.2 105 53.3
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.9e-17 94.7 112 58.0
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 1.9e-16 92.0 355 26.2
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 1.2e-13 82.8 116 44.8
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 2.2e-12 78.6 123 41.5
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.4e-11 75.9 162 33.3
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.0e-09 69.7 134 40.3
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.7e-09 68.9 84 48.8
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 5.0e-09 67.4 44 72.7
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.5e-08 65.9 129 36.4
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 4.7e-07 60.8 57 63.2


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