Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 3.5e-169 598.2 301 100.0
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 4.2e-138 495.0 304 81.2
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 3.3e-135 485.3 308 79.2
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 8.1e-134 480.7 303 79.5
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 4.0e-133 478.4 312 77.9
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 5.3e-133 478.0 317 77.0
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.8e-131 471.9 304 78.3
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 8.4e-131 470.7 306 77.1
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 3.2e-130 468.8 304 78.0
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 5.5e-130 468.0 304 77.6
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 5.5e-130 468.0 304 77.6
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 7.9e-129 464.2 304 76.3
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 8.7e-128 460.7 304 75.7
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 1.5e-127 459.9 304 75.3
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 3.3e-127 458.8 304 76.0
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 9.6e-127 457.2 305 74.8
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 1.2e-124 450.3 305 75.4
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 1.5e-124 449.9 308 74.0
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 2.0e-124 449.5 304 73.4
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 2.6e-124 449.1 304 75.3
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.0e-123 447.2 322 72.4
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 6.5e-123 444.5 305 73.1
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.5e-122 441.4 304 71.7
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 9.3e-122 440.7 300 72.7
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 1.2e-121 440.3 310 71.9
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.6e-121 439.9 302 74.2
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 2.1e-121 439.5 300 73.3
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 2.7e-121 439.1 282 74.8
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 3.5e-121 438.7 304 73.4
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 3.5e-121 438.7 282 75.9
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 1.3e-120 436.8 304 72.4
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.8e-120 436.4 326 69.9
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 3.9e-120 435.3 304 71.7
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 6.7e-120 434.5 306 72.9
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 6.7e-120 434.5 303 70.6
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 1.1e-119 433.7 358 64.8
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 2.5e-119 432.6 303 71.3
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 3.3e-119 432.2 304 71.7
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 4.3e-119 431.8 339 66.4
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 4.3e-119 431.8 303 71.0
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 5.7e-119 431.4 306 70.6
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 7.4e-119 431.0 305 72.1
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 7.4e-119 431.0 279 74.2
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 7.4e-119 431.0 292 73.3
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.6e-118 429.9 269 77.3
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.2e-118 429.5 279 74.2
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 2.8e-118 429.1 305 70.5
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 4.8e-118 428.3 279 74.6
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.1e-117 427.2 269 78.1
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.1e-117 427.2 305 71.8
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 2.4e-117 426.0 315 69.5
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 4.1e-117 425.2 288 71.5
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 4.1e-117 425.2 312 70.5
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 4.1e-117 425.2 301 70.8
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 6.9e-117 424.5 304 70.7
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 9.0e-117 424.1 301 71.1
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 2.6e-116 422.5 301 70.1
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 3.4e-116 422.2 301 70.1
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 2.9e-115 419.1 294 70.1
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 8.5e-115 417.5 281 72.6
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 1.1e-114 417.2 305 69.8
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 2.5e-114 416.0 277 74.0
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.6e-113 413.3 269 75.5
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 4.6e-113 411.8 278 71.2
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 6.1e-113 411.4 291 71.8
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 2.3e-112 409.5 301 67.4
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 6.7e-112 407.9 289 69.2
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.9e-111 406.4 292 67.8
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 2.5e-111 406.0 308 69.5
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 2.5e-111 406.0 305 66.2
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 4.3e-111 405.2 285 68.8
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 9.7e-111 404.1 302 65.6
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 1.7e-110 403.3 300 65.7
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.7e-110 403.3 314 67.2
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 1.8e-109 399.8 270 73.3
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 6.9e-109 397.9 301 64.8
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 6.9e-109 397.9 285 67.4
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 1.2e-108 397.1 303 64.7
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 5.9e-108 394.8 303 64.7
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 7.7e-108 394.4 302 64.6
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 7.7e-108 394.4 302 64.6
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 1.4e-106 390.2 301 64.1
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 7.2e-106 387.9 301 63.5
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 9.4e-106 387.5 304 65.5
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.2e-105 387.1 293 69.3
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 6.1e-105 384.8 278 67.3
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 5.1e-104 381.7 263 69.2
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.7e-102 376.7 282 67.0
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 3.7e-102 375.6 280 65.7
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.7e-102 375.6 280 65.7
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 4.8e-102 375.2 288 64.6
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 8.2e-102 374.4 326 58.9
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 2.4e-101 372.9 301 63.5
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 5.9e-100 368.2 326 58.3
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 9.4e-98 360.9 279 65.9
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 8.0e-97 357.8 281 67.3
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 2.6e-95 352.8 263 68.8
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 2.6e-95 352.8 255 69.0
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 5.7e-95 351.7 326 56.7
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 1.3e-94 350.5 262 69.1
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 5.3e-93 345.1 241 68.9
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 2.6e-92 342.8 300 58.7
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 4.5e-92 342.0 263 66.5
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 1.7e-91 340.1 274 61.3
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 6.5e-91 338.2 251 67.3
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 6.5e-91 338.2 259 64.5
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 2.5e-90 336.3 215 77.2
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 8.0e-89 331.3 261 63.6
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.4e-88 330.5 300 57.3
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.8e-86 322.8 310 58.4
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.1e-85 320.9 249 62.2
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 5.3e-85 318.5 271 58.3
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 1.7e-83 313.5 228 68.4
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 3.8e-83 312.4 249 64.3
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 1.6e-81 307.0 249 60.6
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 2.1e-81 306.6 257 64.6
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 1.4e-80 303.9 215 72.6
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.1e-77 294.3 270 56.3
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 1.4e-77 293.9 203 70.4
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 4.3e-66 255.8 220 58.6
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 8.0e-57 224.9 282 42.2
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 6.4e-54 215.3 300 43.3
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 3.5e-52 209.5 248 47.2
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.2e-49 201.1 155 66.5
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 3.1e-48 196.4 293 38.9
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.3e-46 191.0 121 74.4
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.9e-45 187.2 121 76.0
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 1.6e-44 184.1 122 73.0
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 1.8e-40 170.6 266 38.7
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-35 152.1 143 57.3
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 2.5e-34 150.2 119 63.0
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 5.8e-31 139.0 88 75.0
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 2.1e-28 130.6 83 72.3
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 5.1e-27 125.9 92 67.4
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 6.2e-25 119.0 106 59.4
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 9.0e-24 115.2 287 28.2
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 3.9e-19 99.8 75 64.0
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 8.7e-19 98.6 316 26.9
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 2.5e-18 97.1 260 29.2
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 2.8e-17 93.6 292 27.7
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 3.1e-16 90.1 106 47.2
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 6.9e-16 89.0 150 42.0
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 3.4e-15 86.7 60 65.0
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.3e-14 84.7 76 53.9
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 4.9e-14 82.8 201 26.9
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 6.4e-14 82.4 85 56.5
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 1.2e-12 78.2 70 52.9
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 1.6e-12 77.8 54 63.0
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 1.3e-09 68.2 60 53.3
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 2.8e-09 67.0 47 61.7
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 4.8e-09 66.2 314 23.6
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 6.2e-09 65.9 314 23.6
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 6.9e-08 62.4 39 71.8
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 2.6e-07 60.5 232 24.6
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 2.2e-06 57.4 76 42.1


User provided reference genes

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