Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 5.0e-117 424.5 219 100.0
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 5.8e-65 251.5 219 63.5
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 1.0e-56 224.2 210 58.1
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 5.0e-56 221.9 210 60.5
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 1.6e-54 216.9 191 63.9
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.5e-52 209.5 208 57.2
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 4.1e-50 202.2 215 53.0
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 5.3e-50 201.8 210 54.3
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 1.5e-49 200.3 218 55.0
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 2.6e-49 199.5 201 58.2
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 1.3e-48 197.2 208 56.2
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.1e-47 194.1 206 56.8
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 1.4e-47 193.7 202 55.4
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.5e-47 193.0 205 56.1
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 2.5e-47 193.0 208 55.8
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 3.6e-46 189.1 207 54.6
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 3.6e-46 189.1 207 54.6
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 7.9e-46 188.0 204 54.4
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 1.0e-45 187.6 207 54.1
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 1.4e-45 187.2 211 53.1
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 1.8e-45 186.8 208 51.9
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 1.8e-45 186.8 240 50.0
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 3.0e-45 186.0 213 52.6
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 5.1e-45 185.3 206 52.9
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 5.1e-45 185.3 208 51.0
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 5.1e-45 185.3 201 51.7
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 6.7e-45 184.9 206 53.9
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 8.8e-45 184.5 207 53.6
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 2.0e-44 183.3 203 54.2
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 5.7e-44 181.8 218 51.8
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 5.7e-44 181.8 212 50.5
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 7.4e-44 181.4 207 50.2
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 7.4e-44 181.4 210 51.9
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 9.7e-44 181.0 208 50.5
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 1.3e-43 180.6 207 50.7
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 1.7e-43 180.3 218 49.1
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.7e-43 180.3 209 51.7
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 1.7e-43 180.3 206 49.0
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 1.1e-42 177.6 210 51.9
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.1e-42 177.6 204 50.5
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 1.4e-42 177.2 204 51.0
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 1.8e-42 176.8 204 51.5
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 2.4e-42 176.4 204 51.0
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 2.4e-42 176.4 209 51.2
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 3.1e-42 176.0 210 49.5
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 3.1e-42 176.0 218 49.1
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 6.9e-42 174.9 208 49.0
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 6.9e-42 174.9 206 47.6
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 2.6e-41 172.9 202 50.5
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 3.4e-41 172.6 221 47.1
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 3.4e-41 172.6 204 50.5
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 3.4e-41 172.6 204 49.0
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 5.9e-41 171.8 203 47.3
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 5.9e-41 171.8 217 48.4
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 5.9e-41 171.8 205 49.3
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 7.7e-41 171.4 182 56.6
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 1.0e-40 171.0 218 48.2
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 1.7e-40 170.2 204 50.0
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 2.9e-40 169.5 205 49.3
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 5.0e-40 168.7 221 47.5
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 5.0e-40 168.7 205 49.3
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 1.1e-39 167.5 217 46.1
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 2.5e-39 166.4 208 48.1
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 2.5e-39 166.4 210 48.6
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 2.5e-39 166.4 206 51.9
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 4.2e-39 165.6 209 50.2
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 9.4e-39 164.5 202 47.5
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 3.6e-38 162.5 211 44.5
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 4.7e-38 162.2 161 56.5
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 4.7e-38 162.2 243 43.6
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 6.1e-38 161.8 208 50.5
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 7.9e-38 161.4 217 46.5
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 1.4e-37 160.6 215 45.1
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 2.3e-37 159.8 220 45.9
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 8.8e-37 157.9 207 49.3
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 1.5e-36 157.1 202 49.0
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 7.4e-36 154.8 212 46.7
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 2.8e-35 152.9 208 50.0
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 3.7e-35 152.5 221 44.8
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 4.8e-35 152.1 206 46.6
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 6.3e-35 151.8 207 46.4
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 8.2e-35 151.4 221 43.9
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 1.1e-34 151.0 210 44.3
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 1.4e-34 150.6 213 45.5
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 1.4e-34 150.6 215 44.2
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 3.1e-34 149.4 216 43.5
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 4.1e-34 149.1 206 46.6
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 4.1e-34 149.1 204 44.6
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 9.1e-34 147.9 213 45.1
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 1.2e-33 147.5 202 44.6
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 3.5e-33 146.0 220 43.2
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 4.5e-33 145.6 209 43.1
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 5.9e-33 145.2 212 42.5
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 5.9e-33 145.2 220 43.6
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 1.7e-32 143.7 203 45.8
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 2.2e-32 143.3 212 42.0
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 2.9e-32 142.9 154 52.6
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 3.8e-32 142.5 203 42.9
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 6.5e-32 141.7 208 40.9
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 6.5e-32 141.7 212 41.0
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 1.2e-30 137.5 196 46.9
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 4.7e-30 135.6 209 39.2
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 2.3e-29 133.3 205 39.5
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 3.0e-29 132.9 233 39.1
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 4.0e-29 132.5 207 44.4
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 4.0e-29 132.5 120 62.5
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 5.2e-29 132.1 217 41.0
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 6.7e-29 131.7 215 38.1
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 1.5e-28 130.6 214 40.2
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 2.8e-27 126.3 207 41.5
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 2.8e-27 126.3 209 37.3
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 6.3e-27 125.2 201 39.3
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 1.4e-26 124.0 212 39.6
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 2.0e-25 120.2 209 38.3
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 4.5e-25 119.0 208 37.5
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 1.3e-24 117.5 222 37.4
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 9.4e-23 111.3 228 33.8
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 2.1e-22 110.2 221 34.4
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 1.4e-21 107.5 208 38.9
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 2.3e-21 106.7 200 34.0
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 3.0e-21 106.3 209 35.4
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 4.0e-21 105.9 219 35.2
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 4.0e-21 105.9 217 35.0
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 4.0e-21 105.9 214 36.9
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 6.8e-21 105.1 206 33.0
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 8.8e-21 104.8 217 35.0
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 8.8e-21 104.8 210 35.2
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 1.2e-20 104.4 216 35.6
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 1.5e-20 104.0 216 35.6
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 2.0e-20 103.6 200 36.5
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 3.4e-20 102.8 208 35.6
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 5.7e-20 102.1 225 34.7
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 7.5e-20 101.7 219 34.2
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 1.3e-19 100.9 223 34.5
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 1.7e-19 100.5 226 32.3
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 3.7e-19 99.4 105 57.1
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 8.3e-19 98.2 216 35.2
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 1.1e-18 97.8 216 35.2
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 5.9e-17 92.0 231 29.9
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 7.7e-17 91.7 170 38.2
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 1.3e-16 90.9 86 54.7
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 8.5e-16 88.2 118 43.2
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 1.5e-15 87.4 86 53.5
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 5.2e-13 79.0 195 32.8
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 1.2e-12 77.8 195 32.8
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 1.2e-12 77.8 200 29.5
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 7.5e-12 75.1 187 31.0
CDE02G4410 Ceratophyllum demersum HOM05D001668 ORTHO05D005522 6.3e-11 72.0 113 41.6
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 1.8e-10 70.5 54 64.8
CSS0015165 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 1.2e-09 67.8 205 28.8
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 1.2e-09 67.8 197 30.5
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 7.8e-09 65.1 86 45.3
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 7.8e-09 65.1 86 45.3
DCAR_016539 Daucus carota HOM05D004667 ORTHO05D005522 7.8e-09 65.1 68 52.9
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 1.5e-07 60.8 173 30.1
unitig_0.g780 Utricularia gibba HOM05D004667 ORTHO05D005522 3.3e-07 59.7 56 55.4
Aa31LG8G6630 Aethionema arabicum HOM05D003097 ORTHO05D003437 9.5e-07 58.2 187 27.3
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 2.8e-06 56.6 182 28.6
Pp3c11_20170 Physcomitrium patens HOM05D003097 ORTHO05D005522 2.8e-06 56.6 93 34.4
RcHm_v2.0_Chr2g0099391 Rosa chinensis HOM05D003097 ORTHO05D003437 4.7e-06 55.8 165 28.5
Duzib151G0978 Durio zibethinus HOM05D001139 ORTHO05D000936 6.1e-06 55.5 96 36.5
SGA_v2.0_scaffold80G25871 Striga asiatica HOM05D003097 ORTHO05D003437 6.1e-06 55.5 202 27.7


User provided reference genes

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