Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 0.0e+00 1872.8 994 100.0
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 0.0e+00 1202.2 999 68.4
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 4.8e-311 1071.2 917 65.1
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 7.2e-296 1020.8 916 62.4
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 6.3e-292 1007.7 1018 58.9
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 7.5e-269 931.0 917 59.8
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 2.3e-257 892.9 864 57.1
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 9.0e-230 801.2 872 53.7
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 9.9e-229 797.7 875 54.2
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 8.4e-228 794.7 937 52.1
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.9e-224 783.5 1009 49.3
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 5.6e-224 781.9 955 50.1
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 5.3e-222 775.4 976 49.2
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.7e-220 770.4 871 53.2
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.9e-220 769.6 919 50.3
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 6.0e-218 761.9 934 49.1
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 4.0e-214 749.2 997 48.0
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 4.0e-214 749.2 853 54.0
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.2e-213 747.7 964 47.9
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 7.6e-213 745.0 1044 45.4
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 6.5e-212 741.9 873 50.2
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.2e-210 737.6 882 50.8
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 2.7e-210 736.5 875 51.8
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 1.0e-209 734.6 849 51.9
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 3.0e-209 733.0 921 50.5
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 8.7e-209 731.5 877 51.2
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.2e-207 726.9 939 48.7
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 5.3e-206 722.2 969 48.0
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 7.7e-205 718.4 875 48.2
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.0e-204 718.0 939 49.0
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.0e-204 718.0 872 50.9
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 5.0e-204 715.7 875 51.0
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.6e-202 710.7 945 47.4
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.6e-202 710.7 874 49.9
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.3e-200 703.0 894 49.7
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.7e-199 700.7 963 46.2
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.2e-199 700.3 952 46.6
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.2e-199 700.3 963 46.1
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 2.8e-199 699.9 682 60.1
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.1e-198 698.0 870 49.9
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 9.1e-198 694.9 849 49.2
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 3.4e-197 693.0 992 46.5
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.8e-196 689.5 951 46.0
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.1e-195 688.0 967 45.6
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.2e-195 686.0 966 46.0
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.9e-194 681.8 886 47.3
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.0e-193 681.4 867 49.1
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-193 681.0 970 44.9
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-193 680.6 886 47.0
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.7e-193 678.7 970 44.9
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.1e-192 677.9 881 47.2
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-192 677.9 970 44.3
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.5e-192 677.6 874 49.1
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.0e-192 677.2 886 48.4
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 2.6e-192 676.8 941 45.5
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.6e-192 676.8 868 49.1
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.1e-190 669.8 882 46.7
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.8e-188 662.9 882 47.8
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.8e-188 662.9 920 46.8
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.5e-187 661.0 872 48.2
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 2.5e-187 660.2 875 47.9
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 3.2e-187 659.8 874 48.3
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 7.2e-187 658.7 970 45.7
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 1.2e-186 657.9 874 48.4
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.6e-186 657.5 876 47.6
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.7e-186 656.8 860 46.0
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.7e-186 656.8 952 44.5
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 3.6e-186 656.4 864 47.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.4e-185 654.4 878 47.8
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.4e-185 654.4 875 48.2
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.5e-184 651.0 910 46.2
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.3e-184 649.8 873 47.5
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 9.7e-184 648.3 863 46.5
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.3e-183 645.6 794 51.3
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 6.3e-183 645.6 861 47.7
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.1e-182 644.8 862 46.2
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 7.7e-181 638.6 859 45.1
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.3e-180 637.9 879 47.8
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 3.8e-180 636.3 864 46.1
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-179 634.4 859 45.1
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 6.1e-178 629.0 886 47.4
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.3e-177 627.1 885 46.9
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 3.0e-177 626.7 877 46.2
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 3.0e-177 626.7 901 46.2
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.2e-176 624.8 876 46.3
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.7e-175 620.9 878 46.7
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.6e-173 614.4 864 45.1
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 5.9e-173 612.5 879 45.1
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.9e-171 607.4 892 46.0
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 9.4e-171 605.1 864 44.8
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.6e-170 604.4 904 44.2
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.6e-170 603.2 887 46.0
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 6.8e-169 599.0 886 43.8
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 3.7e-167 593.2 949 44.0
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.8e-166 590.9 877 44.4
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.1e-166 589.7 861 45.2
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.9e-164 583.6 865 46.0
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.1e-163 581.6 889 44.7
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.0e-162 575.5 937 42.2
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 5.2e-161 572.8 905 43.1
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.8e-161 572.4 843 45.2
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 9.8e-160 568.5 678 52.1
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.0e-156 558.5 859 45.4
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.3e-156 557.4 992 40.6
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 8.6e-156 555.4 861 44.5
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.3e-155 553.5 866 44.1
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.0e-153 548.5 617 53.2
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 4.0e-153 546.6 938 43.2
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.3e-151 541.6 865 43.1
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.4e-150 537.3 977 41.4
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 4.1e-150 536.6 943 42.4
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.5e-147 528.1 866 43.1
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 7.3e-147 525.8 868 43.1
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.6e-144 517.3 883 42.1
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 5.8e-144 516.2 652 48.9
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.1e-139 501.9 979 39.2
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.2e-135 487.6 997 36.8
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 2.7e-133 480.7 874 40.7
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 7.8e-133 479.2 870 40.7
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.9e-132 476.9 882 41.5
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.9e-131 474.6 685 48.2
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 8.1e-130 469.2 839 40.2
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.4e-129 468.4 938 38.8
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-128 465.3 977 38.6
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.2e-128 465.3 977 38.6
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.5e-128 464.9 948 39.5
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.0e-128 464.5 946 39.3
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.9e-128 462.2 700 45.1
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 9.9e-128 462.2 982 38.8
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.3e-127 461.8 980 38.7
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 3.8e-127 460.3 975 38.5
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 4.9e-127 459.9 982 38.6
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.9e-126 458.0 974 38.8
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 3.5e-125 453.8 973 38.4
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 4.0e-121 440.3 812 40.9
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.1e-116 423.3 905 36.0
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.1e-113 414.1 509 49.5
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 9.0e-113 412.5 625 43.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.0e-108 399.1 861 35.4
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.1e-105 389.0 545 44.4
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 4.5e-104 383.6 399 55.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.0e-103 382.5 824 36.5
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.2e-103 381.3 862 37.7
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.5e-101 374.0 869 35.7
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-96 358.6 443 49.4
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.3e-90 336.7 718 36.4
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 5.3e-89 333.6 927 32.6
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 2.6e-88 331.3 567 43.7
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.0e-87 327.0 898 32.7
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 8.5e-87 326.2 734 35.3
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-80 305.4 337 50.4
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-75 288.9 791 33.0
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.1e-70 272.7 293 50.5
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 5.9e-64 250.4 385 42.1
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.0e-59 235.3 699 31.9
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 6.3e-58 230.3 415 39.8
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 1.3e-55 222.6 300 48.7
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 3.4e-51 208.0 267 50.9
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 4.5e-48 197.6 273 46.5
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 4.5e-48 197.6 310 42.6
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 6.6e-47 193.7 231 48.9
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.1e-46 193.0 520 32.5
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.1e-38 166.4 473 29.2
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.0e-36 159.8 108 67.6
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.4e-33 149.4 216 43.5
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.0e-27 129.0 208 39.4
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.6e-24 119.4 280 33.9
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 3.5e-24 118.2 104 60.6
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.3e-23 116.3 90 60.0
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.5e-22 110.2 254 36.6
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 1.8e-20 105.9 130 44.6
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.7e-18 99.4 158 39.2
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 8.6e-15 87.0 102 62.7
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.2e-13 83.2 190 32.6
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.8e-12 79.3 78 51.3
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.4e-12 79.0 58 63.8
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.9e-10 72.0 78 44.9
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.4e-09 69.7 163 31.3
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 3.5e-08 65.1 48 54.2
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 2.3e-07 62.4 123 33.3


User provided reference genes

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