Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 2057.3 974 100.0
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1701.8 975 81.3
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1674.4 974 80.6
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1670.2 975 80.4
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1647.9 978 79.3
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1647.1 970 77.5
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1644.4 974 78.9
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1630.5 959 79.4
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1625.1 975 77.2
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1612.8 969 77.0
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1609.7 974 76.3
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1605.1 970 76.3
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1604.0 970 76.5
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1603.6 970 76.5
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1602.0 971 76.5
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1601.6 976 75.7
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1599.7 971 76.2
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1595.9 977 76.8
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1595.5 972 76.5
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1591.2 975 76.2
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1589.7 972 76.5
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1588.9 973 75.3
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1587.0 973 74.8
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1585.9 971 76.2
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1584.7 973 75.2
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1584.3 975 75.1
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1583.5 972 75.4
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1579.3 976 75.1
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1578.9 973 74.8
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1578.5 990 73.6
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1574.3 971 75.2
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1572.4 964 75.7
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1570.8 977 74.6
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1569.3 979 74.2
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1567.4 977 74.5
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1563.9 973 74.8
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1563.1 973 74.5
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1562.7 965 75.8
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1562.0 974 75.2
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1558.5 974 74.6
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1558.1 970 75.3
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1557.3 973 72.7
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1557.3 977 73.9
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1553.9 971 73.9
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1552.3 970 74.8
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1552.0 981 74.4
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1549.3 977 74.3
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1548.1 979 74.1
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1546.6 973 73.7
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1544.6 974 73.5
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1543.9 974 74.1
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1543.5 964 73.9
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1541.9 972 74.1
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1541.9 969 74.0
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1541.6 974 73.8
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1536.9 972 74.4
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 969 72.7
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1536.5 974 73.1
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1536.2 981 73.0
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1534.2 979 73.6
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1532.7 974 73.0
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1532.3 969 73.7
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1532.3 980 71.8
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1531.9 969 74.2
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1530.8 972 73.4
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1526.9 972 73.0
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1526.9 971 73.4
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1526.5 968 72.6
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1524.2 984 72.9
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1524.2 972 73.1
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1523.5 956 74.5
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1523.1 971 72.7
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1523.1 942 75.8
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1518.1 972 73.0
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1518.1 967 72.4
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1515.7 991 71.2
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1513.8 971 72.9
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1511.9 956 74.5
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1507.7 968 72.3
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1505.7 986 71.3
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1504.2 979 71.4
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1503.0 983 71.0
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1496.5 973 71.5
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1494.9 979 71.1
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1493.8 976 72.2
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1489.6 986 70.6
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1489.2 924 74.8
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1483.8 971 69.8
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1483.0 890 76.7
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1475.7 975 70.6
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1472.6 966 71.5
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1466.1 969 70.7
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1463.0 986 68.6
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1461.8 978 70.6
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1460.3 969 69.8
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1451.0 962 69.0
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1444.5 978 70.0
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1441.8 977 69.8
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1435.6 979 69.4
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1427.5 974 68.6
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1426.8 978 68.5
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1426.8 983 68.7
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1426.4 969 69.1
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1422.5 978 68.2
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1421.8 1002 68.4
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1419.1 975 68.3
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1419.1 975 68.3
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1411.7 988 67.1
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1408.3 973 68.4
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1407.5 973 68.2
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1402.1 978 68.6
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1401.7 870 73.6
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1395.9 975 67.6
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1394.0 971 67.5
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1388.6 971 67.3
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1370.5 850 74.4
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1361.3 849 73.4
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1336.6 999 63.0
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1329.7 787 79.2
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1318.9 972 64.6
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1314.7 767 77.7
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1303.1 975 64.7
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1281.9 978 63.8
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1254.2 850 68.2
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1218.4 788 72.2
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1215.3 769 73.3
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1176.0 783 70.6
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.9e-304 1049.3 974 53.8
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.1e-299 1033.5 685 69.9
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.6e-295 1019.6 958 52.4
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.9e-285 986.1 708 67.2
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.5e-285 985.7 978 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.6e-276 956.4 958 50.0
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.2e-264 915.6 966 49.2
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.7e-263 912.5 562 74.9
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.0e-238 830.9 849 51.1
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.3e-204 717.6 399 80.5
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.2e-130 471.9 286 76.2
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 2.0e-117 427.9 412 52.9
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 1.0e-116 425.6 372 58.6
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.7e-116 424.9 343 61.8
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.6e-98 365.2 213 77.5
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.7e-87 328.6 192 78.6
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 4.1e-86 323.9 275 59.6
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.3e-84 318.2 202 70.8
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.9e-75 288.5 159 80.5
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 3.4e-72 277.7 211 63.0
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 4.7e-66 257.3 143 79.7
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.7e-66 257.3 159 72.3
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 8.9e-65 253.1 694 30.5
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 9.3e-54 216.5 378 38.4
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 7.4e-43 180.3 96 82.3
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.6e-42 179.1 779 23.0
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 6.2e-42 177.2 150 59.3
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 2.6e-40 171.8 149 58.4
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.3e-39 169.5 149 54.4
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 7.4e-35 153.7 163 46.6
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.4e-33 148.7 89 77.5
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 6.5e-31 140.6 92 70.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.1e-30 139.8 88 71.6
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.2e-29 136.3 97 61.9
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 4.5e-24 117.9 183 38.8
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 5.5e-22 110.9 184 35.9
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 3.0e-20 105.1 127 45.7
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.6e-18 99.4 114 50.9
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.8e-18 98.6 311 27.3
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 1.8e-17 95.9 118 44.9
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 7.9e-13 80.5 46 73.9
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 4.4e-11 74.7 76 51.3
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 2.4e-09 68.9 44 72.7
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.3e-07 63.2 71 47.9
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 8.5e-07 60.5 48 60.4


User provided reference genes

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