Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 5.9e-116 421.0 231 100.0
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 2.8e-78 295.8 219 76.3
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 7.0e-77 291.2 214 75.2
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 2.0e-76 289.7 235 69.4
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.5e-74 283.5 216 73.6
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 4.3e-74 282.0 216 73.1
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 5.6e-74 281.6 255 66.7
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 9.5e-74 280.8 245 69.4
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 1.6e-73 280.0 230 70.9
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 6.8e-72 274.6 230 71.3
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 2.6e-71 272.7 228 70.2
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 3.2e-69 265.8 230 69.6
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 1.7e-67 260.0 219 68.0
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.8e-64 250.0 230 63.9
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 8.9e-64 247.7 226 65.5
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 2.0e-63 246.5 222 65.8
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 3.4e-63 245.7 231 63.6
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 9.8e-63 244.2 262 57.3
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.9e-62 242.7 235 63.4
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.4e-61 240.4 229 63.3
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.9e-61 240.0 231 64.9
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 4.1e-61 238.8 332 47.6
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.2e-61 237.7 216 65.7
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.1e-60 236.5 216 65.7
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.7e-60 236.1 232 60.8
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 2.7e-60 236.1 224 65.6
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 3.5e-60 235.7 216 65.7
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 7.8e-60 234.6 219 64.4
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.3e-59 233.8 218 64.7
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 2.3e-59 233.0 223 64.6
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.1e-58 230.7 232 60.8
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 1.1e-58 230.7 232 62.5
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.1e-58 230.7 236 62.7
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 1.1e-58 230.7 215 64.2
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 1.5e-58 230.3 232 60.8
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 3.3e-58 229.2 215 65.1
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 9.5e-58 227.6 222 63.5
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.5e-58 227.6 228 61.4
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 1.6e-57 226.9 218 64.2
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 2.1e-57 226.5 229 61.6
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 2.8e-57 226.1 234 59.8
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.6e-57 225.7 231 60.2
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 4.7e-57 225.3 226 60.6
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 6.2e-57 224.9 213 62.0
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.4e-56 223.8 218 59.6
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.1e-56 222.6 241 58.5
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 3.1e-56 222.6 221 62.0
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 3.1e-56 222.6 218 61.5
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 6.8e-56 221.5 265 55.8
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 8.9e-56 221.1 210 65.7
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 1.5e-55 220.3 209 66.0
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.4e-55 218.8 179 65.9
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.4e-55 218.8 179 65.9
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 4.4e-55 218.8 217 63.1
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 5.8e-55 218.4 222 63.1
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 7.5e-55 218.0 217 64.1
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 2.2e-54 216.5 222 62.6
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 3.7e-54 215.7 223 59.2
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.4e-53 213.0 217 59.0
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 4.1e-53 212.2 260 53.8
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 5.4e-53 211.8 222 58.1
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 2.7e-52 209.5 224 58.9
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 6.0e-52 208.4 223 58.7
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.0e-51 207.6 215 61.9
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.0e-51 207.6 217 60.4
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 1.7e-51 206.8 208 59.6
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 2.3e-51 206.5 207 58.9
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 3.9e-51 205.7 183 65.0
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 5.1e-51 205.3 223 57.8
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.5e-50 203.8 218 59.6
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.5e-50 203.8 218 59.6
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 2.5e-50 203.0 221 58.8
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 7.3e-50 201.4 233 56.7
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 9.5e-50 201.1 222 59.0
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 1.6e-49 200.3 204 58.8
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.8e-49 199.5 217 59.0
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 3.6e-49 199.1 232 56.5
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 6.2e-49 198.4 215 57.7
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 8.1e-49 198.0 233 57.1
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 8.1e-49 198.0 232 56.9
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 1.1e-48 197.6 239 54.8
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.4e-48 196.4 226 53.5
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.4e-48 196.4 236 53.0
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 3.1e-48 196.1 233 55.8
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 3.1e-48 196.1 221 58.8
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 6.8e-48 194.9 232 54.3
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 1.2e-47 194.1 208 55.3
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.2e-47 194.1 211 57.8
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 5.8e-47 191.8 224 56.2
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 5.8e-47 191.8 215 57.2
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 5.8e-47 191.8 212 58.0
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 9.9e-47 191.0 217 54.4
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 1.3e-46 190.7 219 54.8
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.7e-46 190.3 230 55.2
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 4.9e-46 188.7 206 57.8
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.4e-45 187.2 206 59.2
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 2.4e-45 186.4 235 52.8
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 2.4e-45 186.4 226 53.5
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.6e-44 183.7 215 55.8
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 3.5e-44 182.6 220 55.0
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 6.0e-44 181.8 215 55.3
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 6.0e-44 181.8 215 55.3
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 5.1e-43 178.7 215 54.4
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 4.3e-42 175.6 210 54.8
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 5.6e-42 175.3 207 56.0
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 7.3e-42 174.9 210 55.2
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 4.7e-41 172.2 209 53.6
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 4.7e-41 172.2 220 54.1
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 6.2e-41 171.8 157 66.9
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 5.3e-40 168.7 222 52.7
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 3.4e-39 166.0 215 50.7
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 3.4e-39 166.0 215 50.7
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 5.8e-39 165.2 200 52.0
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.3e-38 164.1 246 47.6
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 1.3e-38 164.1 246 47.6
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 8.4e-38 161.4 215 50.7
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 8.4e-38 161.4 215 50.7
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 8.4e-38 161.4 215 50.7
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.4e-37 159.8 191 56.0
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 3.2e-37 159.5 224 46.9
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 9.3e-37 157.9 217 51.2
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.9e-34 150.2 160 58.8
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 9.6e-34 147.9 213 46.5
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 3.6e-33 146.0 221 49.3
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.2e-30 136.7 301 39.5
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.4e-29 134.0 161 55.9
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.1e-28 130.2 216 43.1
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 4.6e-28 129.0 87 79.3
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.0e-27 127.9 143 57.3
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 1.1e-24 117.9 210 44.3
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.7e-22 110.5 245 38.4
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 1.1e-21 107.8 195 43.6
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.9e-21 107.1 225 36.4
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 6.0e-20 102.1 159 49.1
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 5.1e-19 99.0 130 51.5
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 1.2e-15 87.8 83 57.8
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.7e-14 84.0 101 56.4
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 8.7e-11 71.6 90 52.2
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 9.7e-10 68.2 48 72.9
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 2.2e-09 67.0 230 34.3
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.8e-09 65.9 45 77.8
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.1e-08 64.7 45 77.8
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.8e-08 63.9 82 56.1
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 5.3e-08 62.4 55 61.8
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 5.3e-08 62.4 55 61.8
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 3.4e-07 59.7 86 45.3
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 4.5e-07 59.3 80 51.2
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 5.9e-07 58.9 202 30.7
CAN.G1352.26 Capsicum annuum HOM05D002196 ORTHO05D011452 3.8e-06 56.2 63 55.6
Lsat_1_v5_gn_2_102640 Lactuca sativa HOM05D004799 ORTHO05D005500 6.5e-06 55.5 66 54.5


User provided reference genes

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