Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 4.9e-134 481.1 237 100.0
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 2.9e-86 322.4 238 70.2
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 2.7e-84 315.8 240 68.3
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 8.8e-83 310.8 238 66.4
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 7.4e-82 307.8 238 66.0
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 1.7e-81 306.6 237 65.8
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 1.3e-70 270.4 239 58.6
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 1.2e-63 247.3 245 54.7
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 7.7e-63 244.6 238 55.0
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 2.2e-62 243.0 237 54.0
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 5.0e-62 241.9 239 54.0
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 5.0e-62 241.9 239 54.4
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 8.5e-62 241.1 237 54.0
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 1.9e-61 240.0 238 52.9
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.9e-61 240.0 239 54.0
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 3.6e-60 235.7 237 51.9
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 6.1e-60 235.0 237 52.3
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 2.3e-59 233.0 237 54.0
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 3.0e-59 232.6 237 52.7
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 2.0e-58 229.9 211 55.5
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 5.7e-58 228.4 246 49.6
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.3e-57 227.3 240 52.1
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.3e-57 227.3 240 52.1
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.7e-57 226.9 236 50.4
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 4.8e-57 225.3 244 51.6
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 8.3e-57 224.6 237 51.9
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 8.3e-57 224.6 241 49.8
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 1.4e-56 223.8 237 49.8
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.8e-56 223.4 245 51.0
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 2.4e-56 223.0 198 57.6
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 5.4e-56 221.9 254 49.2
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 5.4e-56 221.9 243 51.9
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 7.0e-56 221.5 237 49.8
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 9.1e-56 221.1 243 51.4
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 1.6e-55 220.3 238 50.4
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.7e-55 219.5 237 49.8
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 1.7e-54 216.9 241 49.8
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.9e-54 216.1 237 49.8
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.9e-54 216.1 236 49.6
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 2.9e-54 216.1 241 50.6
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.9e-54 216.1 238 49.6
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 2.9e-54 216.1 238 49.6
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 5.0e-54 215.3 245 49.0
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 1.9e-53 213.4 242 50.0
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 1.9e-53 213.4 241 51.5
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.5e-53 213.0 237 50.6
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 4.2e-53 212.2 243 46.5
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 4.2e-53 212.2 240 51.2
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 4.2e-53 212.2 233 49.4
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 5.5e-53 211.8 195 53.8
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.6e-52 210.3 216 53.2
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 1.6e-52 210.3 257 48.6
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 3.6e-52 209.1 235 49.4
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 3.6e-52 209.1 241 51.0
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.6e-52 209.1 234 48.7
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 6.1e-52 208.4 165 62.4
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 1.0e-51 207.6 241 48.5
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.8e-51 206.8 243 49.0
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 2.3e-51 206.5 237 47.3
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 4.0e-51 205.7 249 45.4
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 5.2e-51 205.3 240 46.2
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 6.8e-51 204.9 245 49.0
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 1.2e-50 204.1 267 44.2
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.6e-50 203.0 242 48.8
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 3.4e-50 202.6 242 46.3
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 4.4e-50 202.2 216 51.4
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 5.7e-50 201.8 240 45.4
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 7.5e-50 201.4 184 57.6
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 7.5e-50 201.4 213 49.3
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 9.8e-50 201.1 245 45.7
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 9.8e-50 201.1 242 48.8
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 9.8e-50 201.1 237 51.5
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 1.3e-49 200.7 213 50.2
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 1.7e-49 200.3 240 47.9
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.7e-49 199.1 254 44.5
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 4.9e-49 198.7 240 47.5
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 8.3e-49 198.0 229 48.0
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.4e-48 196.4 245 45.3
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 3.2e-48 196.1 241 46.5
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 3.2e-48 196.1 227 50.7
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 3.2e-48 196.1 245 44.5
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 5.4e-48 195.3 240 46.7
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.4e-48 195.3 249 45.4
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.0e-48 194.9 250 45.2
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 9.2e-48 194.5 243 47.3
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 1.2e-47 194.1 237 48.5
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 1.2e-47 194.1 237 48.5
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 1.2e-47 194.1 237 47.7
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 1.2e-47 194.1 249 43.4
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 1.2e-47 194.1 236 47.0
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 2.0e-47 193.4 246 46.7
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 2.7e-47 193.0 224 48.2
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 3.5e-47 192.6 244 46.7
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.5e-47 192.2 252 44.8
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 7.8e-47 191.4 237 45.1
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 7.8e-47 191.4 163 57.1
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 1.0e-46 191.0 237 45.1
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 6.6e-46 188.3 194 52.1
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 1.1e-45 187.6 214 49.5
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.5e-45 187.2 210 48.6
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 1.5e-45 187.2 157 58.6
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 3.3e-45 186.0 248 46.0
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 9.5e-45 184.5 188 54.3
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 9.5e-45 184.5 176 55.1
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 1.2e-44 184.1 247 46.2
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 1.2e-44 184.1 244 43.9
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.6e-44 183.7 210 48.1
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.8e-44 183.0 244 45.1
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 3.6e-44 182.6 241 46.1
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 4.7e-44 182.2 246 43.5
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 8.0e-44 181.4 208 50.0
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 3.1e-43 179.5 246 43.9
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.1e-43 179.5 209 46.9
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 6.8e-43 178.3 246 43.9
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 6.8e-43 178.3 157 56.1
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 6.8e-43 178.3 162 55.6
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 8.9e-43 177.9 242 44.6
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 1.5e-42 177.2 240 46.2
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 2.0e-42 176.8 252 42.5
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 3.4e-42 176.0 140 62.9
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 4.4e-42 175.6 230 47.0
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 8.3e-41 171.4 211 46.9
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 2.4e-40 169.9 245 43.3
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 2.4e-40 169.9 169 52.7
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 4.1e-40 169.1 249 42.2
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 9.2e-40 167.9 193 48.2
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 2.7e-39 166.4 155 56.1
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 6.0e-39 165.2 163 50.3
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 2.3e-38 163.3 237 43.0
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 4.3e-37 159.1 237 40.5
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 4.3e-37 159.1 220 42.3
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.2e-36 157.5 240 40.8
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 6.2e-36 155.2 260 37.7
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.0e-34 150.2 160 46.2
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.9e-32 143.7 239 39.7
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 5.4e-32 142.1 149 47.7
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 7.8e-31 138.3 137 53.3
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 2.8e-28 129.8 243 36.2
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 6.8e-27 125.2 246 36.6
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 3.9e-22 109.4 206 36.9
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 2.6e-18 96.7 71 60.6
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 8.4e-17 91.7 75 58.7
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 1.4e-16 90.9 236 32.6
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 9.3e-16 88.2 166 39.8
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 3.0e-14 83.2 195 36.4
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 8.7e-14 81.6 58 62.1
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 3.3e-13 79.7 56 62.5
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 7.3e-13 78.6 55 63.6
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 9.0e-11 71.6 81 50.6
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 1.2e-10 71.2 51 58.8
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.9e-08 63.9 73 41.1
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.4e-08 62.4 41 63.4
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 2.1e-07 60.5 72 40.3
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 2.1e-07 60.5 102 39.2
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 3.5e-07 59.7 96 41.7
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 8.7e-06 55.1 49 55.1
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 8.7e-06 55.1 50 50.0


User provided reference genes

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