Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 4754.9 2397 100.0
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 3612.8 2405 76.5
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 3343.1 2428 69.9
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2819.6 2439 59.2
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2665.2 2438 56.4
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2650.5 2475 55.8
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2597.8 2410 55.4
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2561.6 2418 55.6
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2553.5 2454 54.7
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2552.3 2446 54.5
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2550.4 2449 54.3
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2536.1 2413 55.0
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2535.8 2367 55.6
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2530.7 2433 54.6
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2523.4 2473 54.2
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2521.9 2424 54.2
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2519.2 2390 55.6
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2512.3 2437 54.8
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2509.6 2420 54.3
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2508.0 2445 53.6
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2500.7 2438 53.7
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2496.5 2425 54.6
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2491.5 2442 53.4
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2488.8 2438 52.9
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2481.4 2440 53.3
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2477.6 2437 53.6
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2476.4 2387 54.0
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2473.7 2444 52.5
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2469.5 2438 53.1
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2468.3 2444 52.5
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2464.5 2457 52.0
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2458.7 2435 52.7
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2432.1 2414 52.9
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2422.9 2433 52.0
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2404.0 2471 51.2
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2401.7 2429 51.0
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2397.1 2471 51.2
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2394.8 2441 51.8
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2394.8 2469 51.2
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2388.2 2422 50.9
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2387.8 2423 51.1
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2384.4 2421 51.1
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2379.0 2471 50.9
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2368.2 2436 51.5
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2359.7 2390 51.1
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2357.4 2431 50.9
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2350.9 2411 50.6
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2350.5 2423 50.6
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2348.2 2415 50.4
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2347.4 2414 51.3
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2340.8 2429 50.3
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2328.9 2467 49.5
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2325.1 2446 50.7
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2312.3 2414 50.2
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2296.9 2412 51.0
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2295.0 2459 50.9
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2288.8 2423 51.3
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2271.5 2425 50.4
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2271.1 2438 50.1
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2266.1 2442 50.1
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2260.0 2419 49.6
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2253.4 2463 49.0
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2251.9 2418 49.4
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2249.2 2468 49.0
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2239.9 2429 49.3
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2236.1 2417 48.6
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2233.8 2113 55.5
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2228.4 2428 49.7
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2227.6 2428 49.8
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2222.2 2452 49.6
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 2216.0 2410 50.3
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2214.5 2420 49.0
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2206.0 2433 49.1
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2201.8 2430 48.7
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2196.0 2424 48.8
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2193.3 2434 49.2
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2191.4 2426 48.8
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2189.1 2436 48.5
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2188.7 2413 48.3
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2186.4 2458 48.1
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2183.3 2457 48.1
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2182.1 2425 49.2
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2166.3 2070 55.4
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2157.5 2423 47.3
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2156.7 2070 55.2
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2151.3 2397 48.4
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2058.5 2230 49.1
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2048.1 2437 46.5
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2027.3 2425 46.5
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1906.3 2383 43.6
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1882.8 2427 43.3
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1845.1 1828 51.8
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1756.1 2507 41.3
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1562.0 1460 54.9
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1551.2 1460 54.7
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1548.1 1641 50.7
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1512.7 1028 74.5
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1498.4 1444 54.9
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1489.2 1521 51.6
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1383.2 1369 54.1
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1343.2 1389 51.5
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1309.3 1407 51.4
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1225.3 1101 57.6
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1187.6 1561 43.2
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1162.5 1164 52.1
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 7.0e-305 1052.0 1013 54.9
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 2.4e-276 957.2 1031 48.5
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.0e-263 915.2 2548 28.4
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 4.0e-260 903.3 1386 38.7
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.4e-241 841.6 2098 30.2
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 1.4e-241 841.6 897 48.3
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 2.0e-238 831.2 2098 30.3
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 4.1e-228 797.0 1487 35.3
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 3.4e-214 750.7 585 63.8
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.5e-209 735.3 850 46.2
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 4.9e-197 693.7 766 46.7
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 6.2e-192 676.8 2613 25.4
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.3e-170 605.9 802 41.3
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 5.8e-158 563.9 810 40.7
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 8.5e-117 427.2 405 55.1
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.7e-107 395.6 461 47.1
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 6.3e-104 384.4 317 58.4
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 9.1e-103 380.6 472 44.9
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 3.5e-102 378.6 257 68.9
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 7.0e-95 354.4 396 47.7
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 2.1e-83 316.2 330 48.2
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 3.4e-81 308.9 319 50.8
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 3.7e-72 278.9 495 35.6
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 4.6e-70 271.9 334 43.7
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.3e-69 270.4 240 58.3
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 7.3e-68 264.6 339 43.4
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 5.8e-65 255.0 438 37.9
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 1.5e-52 213.8 150 68.7
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 8.1e-51 208.0 334 40.1
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.8e-50 206.8 277 42.6
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 1.5e-49 203.8 193 59.6
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.7e-45 190.3 122 76.2
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 2.3e-45 189.9 209 47.8
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.5e-44 186.4 256 46.1
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.8e-43 182.2 187 52.9
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 1.7e-40 173.7 123 68.3
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 1.5e-36 160.6 120 65.8
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 3.7e-35 156.0 98 78.6
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 1.4e-34 154.1 136 56.6
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 2.4e-34 153.3 114 64.0
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 9.0e-34 151.4 790 22.4
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.8e-33 148.7 277 33.2
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 4.3e-28 132.5 320 31.6
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 3.1e-26 126.3 320 29.1
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 7.1e-23 115.2 318 29.6
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.6e-22 112.5 175 40.0
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-21 110.9 98 55.1
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.9e-20 107.1 135 41.5
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 4.1e-18 99.4 138 38.4
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 6.9e-18 98.6 149 36.2
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 1.7e-16 94.0 179 31.3
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 3.3e-12 79.7 95 43.2
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 1.1e-10 74.7 76 46.1
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 1.4e-10 74.3 76 46.1
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.6e-09 70.1 65 47.7
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 3.4e-09 69.7 122 34.4
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.5e-08 65.5 118 36.4
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 5.5e-07 62.4 42 71.4
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 5.5e-07 62.4 110 35.5
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 9.4e-07 61.6 77 41.6


User provided reference genes

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